View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10036_high_18 (Length: 252)
Name: NF10036_high_18
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10036_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 6861720 - 6861956
Alignment:
| Q |
1 |
ttagccatattctttacactaccagtacatgccttttcatctctattaaaataagtgatccatacgaacaatttgaaatttctaatattttttcatgtct |
100 |
Q |
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| T |
6861720 |
ttagccatattctttacactaccagtacatgccttttaatctctattaaaataagtgatccatacgaacaatttgaaatttctaatattttttcatgtct |
6861819 |
T |
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| Q |
101 |
gattttaatgcagcatattctatagccatgaatttcttgaaggataaagagaaagaaaattgtggccaagaatgttattacctgaatccatatggtgatt |
200 |
Q |
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| T |
6861820 |
gattttaatgcagcatattctatagccatgaatttcttgaaggataaagagaaagaaaattgtggccaagaatgttattacctgaatccatatggtgatt |
6861919 |
T |
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| Q |
201 |
tatcttgaaaaattggttaagcaaacctcgaacttca |
237 |
Q |
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| T |
6861920 |
tatcttgaagaattggttaagcaaacctccaacttca |
6861956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 6861679 - 6861727
Alignment:
| Q |
81 |
tctaatattttttcatgtctgattttaatgcagcatattctatagccat |
129 |
Q |
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| T |
6861679 |
tctaatatttttttctgtctgattttaatgcagcatattctttagccat |
6861727 |
T |
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