View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10036_low_1 (Length: 594)

Name: NF10036_low_1
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10036_low_1
NF10036_low_1
[»] chr7 (10 HSPs)
chr7 (315-473)||(16824873-16825031)
chr7 (18-122)||(16824567-16824671)
chr7 (204-282)||(16824753-16824831)
chr7 (513-572)||(16825065-16825124)
chr7 (370-423)||(16969402-16969455)
chr7 (341-422)||(16993064-16993145)
chr7 (38-121)||(16824746-16824829)
chr7 (381-420)||(17008728-17008767)
chr7 (367-421)||(16978537-16978591)
chr7 (381-423)||(17008848-17008890)
[»] chr4 (1 HSPs)
chr4 (341-423)||(35262169-35262251)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 315 - 473
Target Start/End: Original strand, 16824873 - 16825031
Alignment:
Q  315 agaaccagaaacagagttcaaaacattctttctccgttttgatgacccaacaagtggaacacaactaaacaatggaacatttttgctacgagttctgcta 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16824873 agaaccagaaacagagttcaaaacattctttctccgttttgatgacccaacaagtggaacacaactaaacaatggaacatttttgctacgagttctgcta 16824972  T
Q  415 gaaacaccaagtaagaaaacatttctgctacgagttctactagaaacaccagccataag 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16824973 gaaacaccaagtaagaaaacatttctgctacgagttctactagaaacaccagccataag 16825031  T

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Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 16824567 - 16824671
Alignment:
Q  18 aacacaaccctcaaacatcttctcatcacattgcaccaacccttcttcatctttatcatcatcatcaatggaaataacctcaccatttttcggaaccaca 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16824567 aacacaaccctcaaacatcttctcatcacattgcaacaacccttcttcatctttatcatcatcatcaatggaaataacctcaccatttttcggaaccaca 16824666  T
Q  118 aaaga 122  Q
    |||||    
T  16824667 aaaga 16824671  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 16824753 - 16824831
Alignment:
Q  204 acaatgctctgaccctttttcatctccatcatcataatcaagcgaaataacctcaacattcttaggaacaacaaaaggc 282  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16824753 acaatgctctgaccctttttcatctccatcatcataatcaagggaaataacctcaacattcttaggaacaacaaaaggc 16824831  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 16825065 - 16825124
Alignment:
Q  513 ttgtgttctgtggtaggaatgtgatgtgataagtgaaagaagatcttaatggaagaatga 572  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16825065 ttgtgttctgtgctaggaatgtgatgtgataagtgaaagaagatcttaatggaagaatga 16825124  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 16969402 - 16969455
Alignment:
Q  370 ggaacacaactaaacaatggaacatttttgctacgagttctgctagaaacacca 423  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  16969402 ggaagacaaccaaacaatggaacatttttgctacgagttctgctagaaatacca 16969455  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 16993064 - 16993145
Alignment:
Q  341 tctttctccgttttgatgacccaacaagtggaacacaactaaacaatggaacatttttgctacgagttctgctagaaacacc 422  Q
    |||||||||| |||||||||||| |||||  || | ||| |||||| |||||||| ||||||||||||||||| ||||||||    
T  16993064 tctttctccgctttgatgacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctcgaaacacc 16993145  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 16824746 - 16824829
Alignment:
Q  38 tctcatcacattgcaccaacccttcttcatctttatcatcatcatcaatggaaataacctcaccatttttcggaaccacaaaag 121  Q
    |||||||||| ||| |  |||||| |||||||  |||||||| ||||| ||||||||||||| |||| || ||||| |||||||    
T  16824746 tctcatcacaatgctctgaccctttttcatctccatcatcataatcaagggaaataacctcaacattcttaggaacaacaaaag 16824829  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 17008728 - 17008767
Alignment:
Q  381 aaacaatggaacatttttgctacgagttctgctagaaaca 420  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  17008728 aaacaatggcacatttttgctacgagttctgccagaaaca 17008767  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 16978537 - 16978591
Alignment:
Q  367 agtggaacacaactaaacaatggaacatttttgctacgagttctgctagaaacac 421  Q
    ||||||| |||||  |||||||||||||| ||||| ||||||||||| |||||||    
T  16978537 agtggaagacaacggaacaatggaacattcttgcttcgagttctgcttgaaacac 16978591  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 17008848 - 17008890
Alignment:
Q  381 aaacaatggaacatttttgctacgagttctgctagaaacacca 423  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||    
T  17008848 aaacaatggaacattcttgctacgagttctgttagaaagacca 17008890  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 423
Target Start/End: Complemental strand, 35262251 - 35262169
Alignment:
Q  341 tctttctccgttttgatgacccaacaagtggaacacaactaaacaatggaacatttttgctacgagttctgctagaaacacca 423  Q
    ||||||||||||||||||| ||| |||||  || | ||| |||||| |||||||| |||||||||||||||||||||||||||    
T  35262251 tctttctccgttttgatgaaccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctagaaacacca 35262169  T

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