View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10036_low_12 (Length: 348)
Name: NF10036_low_12
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10036_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 47486603 - 47486922
Alignment:
| Q |
15 |
gacatcaagacgtttcaagctagcttcgcagcatgaacgcacataatccggtgaacccttgattaccataccagaatcatcgtttctggctataccgaat |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47486603 |
gacatcgagacgtttcaagctagcttcgcagcatgaacgcacataatccggtgaacc-ttgattaccataccagaatcatcgcttctggctataccgaat |
47486701 |
T |
|
| Q |
115 |
tttgtagccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaataattataaactaaaattagcatgaagtttcatttgca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47486702 |
tttgtagccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaataattataaactaaaattagcatgaagtttcatttgca |
47486801 |
T |
|
| Q |
215 |
atataaaatttagaacattaaagaaattcttggtccgtagttatttgtatgcatgtacctttccaaccaatatttcattaccaccatcgactccataaac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47486802 |
atataaaatttagaacattaaagaaattcttggtacgtagttatttgtatgcatgtacctttccaaccaatatttcattaccaccatcgactccataaac |
47486901 |
T |
|
| Q |
315 |
atcagcagtatcaaataaagt |
335 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47486902 |
atcagcagtatcaaataaagt |
47486922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 47477319 - 47477474
Alignment:
| Q |
22 |
agacgtttcaagctagcttcgcagcatgaacgcacataatccggtgaacccttgattaccataccagaatcatcgtttctggctataccgaattttgtag |
121 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||| || |||||| |||||| |||||||||| |
|
|
| T |
47477319 |
agacgtttcaagctagcttcgcagcttgaacgcacatactccggtgaacctttgatgcccataccaccgccac---ttctggatataccaaattttgtag |
47477415 |
T |
|
| Q |
122 |
ccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaataat |
180 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47477416 |
ccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaataat |
47477474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 47477683 - 47477748
Alignment:
| Q |
270 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagt |
335 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| ||||||||||||||| || ||||| ||||| |
|
|
| T |
47477683 |
tacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcaaaaaaagt |
47477748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 47474077 - 47474149
Alignment:
| Q |
105 |
tataccgaattttgtagccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaat |
177 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||| || | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
47474077 |
tataccaaattttgtagccaactggatcttttctctgggcaattgctttaatgcctagtcaacaaaatcaaat |
47474149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 47473979 - 47474040
Alignment:
| Q |
16 |
acatcaagacgtttcaagctagcttcgcagcatgaacgcacataatccggtgaacccttgat |
77 |
Q |
| |
|
||||| |||||||||||||||||||| || || || ||||| || || |||||||||||||| |
|
|
| T |
47473979 |
acatcgagacgtttcaagctagcttcacaacacgagcgcacgtactcaggtgaacccttgat |
47474040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University