View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10036_low_14 (Length: 315)
Name: NF10036_low_14
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10036_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 43583261 - 43583549
Alignment:
| Q |
19 |
acttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaactcctccctcaccaaag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43583261 |
acttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaacttctccctcaccaaag |
43583360 |
T |
|
| Q |
119 |
ggaggatgctgtgaactcccttgcttacgaagccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttctacaaagacaagtt |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583361 |
ggaggatgctgtgaactcccttgcttatgaagccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttctacaaagacaagtt |
43583460 |
T |
|
| Q |
219 |
caaaggcttcaaaaggaactcgacgctgccaacaccgatcttcttcgctattccctcgctgatatctctccacctcctccagcatctct |
307 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583461 |
caaaggcttcaaaaggaactcgacgctgctaacaccgatcttcttcgctattccctcgctgatatctctccacctcctccagcatctct |
43583549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 32513176 - 32513111
Alignment:
| Q |
19 |
acttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtca |
84 |
Q |
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|||||||| | || |||||||| |||||||| || || |||||| | ||||||||||||||||||| |
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| T |
32513176 |
acttccctgctgatgagcctcacaaatttgctaatgttcacaaagtctttggtgctagcaatgtca |
32513111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 267
Target Start/End: Original strand, 34675283 - 34675520
Alignment:
| Q |
30 |
gaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaactcctccctcaccaaagggaggatgctg |
129 |
Q |
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||||| |||||||||||||||||||| ||||| || || || || ||||| ||||||||| | ||||| ||||||||||||||||| || || ||||| | |
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| T |
34675283 |
gaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcag |
34675382 |
T |
|
| Q |
130 |
tgaactcccttgcttacgaagccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttctacaaagacaagttcaaaggcttca |
229 |
Q |
| |
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|||| ||||||||||| |||||||| ||||| || || ||||| |||||||| ||||| || || |||||||| || || ||||||||||| || ||||| |
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| T |
34675383 |
tgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttca |
34675482 |
T |
|
| Q |
230 |
aaaggaactcgacgctgccaacaccgatcttcttcgct |
267 |
Q |
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||||||||| || |||| || ||||||||||||||| |
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| T |
34675483 |
aaaggaacttgattctgctaatgccgatcttcttcgct |
34675520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 12360831 - 12360614
Alignment:
| Q |
21 |
ttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaactcctccctcaccaaaggg |
120 |
Q |
| |
|
||||| |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| | || ||||| |||||| | | || || ||||||| |
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| T |
12360831 |
ttcccaccagaagaaccacaaaaatttgcaaatgttcacaaaatatttggtgcaagcaatgtaagtaaacttctgaatgaagtgcaaccacatcaaaggg |
12360732 |
T |
|
| Q |
121 |
aggatgctgtgaactcccttgcttacgaagccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttctacaaagacaagttca |
220 |
Q |
| |
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| ||||| |||||||| |||||||| ||||| || ||| | | | |||||||||||||| || || || ||||| || | || |||||||||||| |
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| T |
12360731 |
aagatgcagtgaactctcttgcttatgaagctgaggcaaggataaaagatccagtttatggttgcgtcggtgccatttcagtcctccaaagacaagttat |
12360632 |
T |
|
| Q |
221 |
aaggcttcaaaaggaact |
238 |
Q |
| |
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||||| ||||||||||| |
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| T |
12360631 |
taggctccaaaaggaact |
12360614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 15262668 - 15262785
Alignment:
| Q |
34 |
agcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaactcctccctcaccaaagggaggatgctgtgaa |
133 |
Q |
| |
|
|||| |||||||||||||| || || | ||| ||||| || |||||||| ||||||||||||||||| | | |||||||||| | || ||||||||||| |
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| T |
15262668 |
agccacaaaaatttgcaaatgttcatagaatttttggagcaagcaatgttacaaagcttctcaatgatttacaccctcaccaacgtgaagatgctgtgaa |
15262767 |
T |
|
| Q |
134 |
ctcccttgcttacgaagc |
151 |
Q |
| |
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|| |||||||| ||||| |
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| T |
15262768 |
ttcacttgcttatgaagc |
15262785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 591191 - 591411
Alignment:
| Q |
21 |
ttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaactcctccctcaccaaaggg |
120 |
Q |
| |
|
||||| |||||||||||||| || |||||||| || ||||||||||||||||| || ||||| | || |||| |||||| | | || || ||||| | |
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| T |
591191 |
ttcccaccagaagagcctcataagtttgcaaatgttcacaaaatatttggtgcaagtaatgttagcaaaattctaaatgaagttttaccccatcaaagag |
591290 |
T |
|
| Q |
121 |
aggatgctgtgaactcccttgcttacgaagccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttctacaaagacaagttca |
220 |
Q |
| |
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| ||| | ||||| || || ||||| ||||| |||||| | ||| |||||||| ||||| ||||| ||||| || ||| | || ||||||||| | | |
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| T |
591291 |
aagatacggtgaattctctagcttatgaagctgaagcaaggattaaagatccagtgtatggttgtgttggagctatatctgtgcttcaaagacaactcct |
591390 |
T |
|
| Q |
221 |
aaggcttcaaaaggaactcga |
241 |
Q |
| |
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| |||||||||||||||||| |
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| T |
591391 |
taagcttcaaaaggaactcga |
591411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 600768 - 600829
Alignment:
| Q |
21 |
ttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgt |
82 |
Q |
| |
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||||| |||||||||||||| ||||||| || || ||||||||||||||||| |||||||| |
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| T |
600768 |
ttcccaccagaagagcctcataaatttgtcaatgttcacaaaatatttggtgcaagcaatgt |
600829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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