View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10036_low_17 (Length: 263)
Name: NF10036_low_17
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10036_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 38185462 - 38185237
Alignment:
| Q |
22 |
caccacttatataagaacacttagctcgtgctattgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccact |
121 |
Q |
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| T |
38185462 |
caccacttatataagaacacttagcttgtgctattgcattttcacaagccaccattaccatggcgcaaaaccaccacttcctcatcatcacatacccact |
38185363 |
T |
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| Q |
122 |
acacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgcctt |
221 |
Q |
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| T |
38185362 |
acacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatctacttacacactggcctt |
38185263 |
T |
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| Q |
222 |
accaacaaatcaaccatcccgggcct |
247 |
Q |
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| T |
38185262 |
atcaacaaaccaaccatcccaggcct |
38185237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 47 - 254
Target Start/End: Complemental strand, 38180768 - 38180561
Alignment:
| Q |
47 |
tcgtgctattgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctc |
146 |
Q |
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| T |
38180768 |
tcgtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctc |
38180669 |
T |
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| Q |
147 |
caattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcc |
246 |
Q |
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| T |
38180668 |
caattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatctcgggcc |
38180569 |
T |
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| Q |
247 |
tttgcttc |
254 |
Q |
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| T |
38180568 |
tttccttc |
38180561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 38170947 - 38170754
Alignment:
| Q |
54 |
attgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcg |
153 |
Q |
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||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
38170947 |
attgcattttcacaatccaccactaccatggcgcaaaaccaccacttcctcatcataacatacccactacaaggtcacataaaccctgccctccaattca |
38170848 |
T |
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| Q |
154 |
ccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcct |
247 |
Q |
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| T |
38170847 |
ccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatccacttatacagtcgccttatcaacaaaccaaccatcccgggcct |
38170754 |
T |
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