View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10036_low_18 (Length: 261)
Name: NF10036_low_18
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10036_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 49587441 - 49587208
Alignment:
| Q |
19 |
gaaatagcaccagccgctgaaccaatcaaaagggtttcaaagttgccgatcttctcttgtttgaaaattttccggtatgctttccgcagagtgtcgtagg |
118 |
Q |
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| T |
49587441 |
gaaatagcaccagccgctgaaccaatcaaaagggtttcaaagttgccgatcttctcttgtttgaaaattttccggtatgctttccgcagagtgtcgtagg |
49587342 |
T |
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| Q |
119 |
caaagtaattggtagccgaatatggaataactccaataagactaggtgtcaagcctctgtaaagttctgcagggccctcttctttaattattttcacgaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49587341 |
caaagtaattggtagccgaatatggaataactccaataagactaggtgtcaggcctctgtaaagttctgcagggccctcttctttaattattttcacgaa |
49587242 |
T |
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| Q |
219 |
agcgtcaaggagaccattgtaaacacctctctgc |
252 |
Q |
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| T |
49587241 |
agcgtcaaggagaccattgtaaacacctctctgc |
49587208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 2322638 - 2322870
Alignment:
| Q |
19 |
gaaatagcaccagccgctgaaccaatcaaaagggtttcaaagttgccgatcttctcttgtttgaaaattttccggtatgctttccgcagagtgtcgtagg |
118 |
Q |
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||||||||||| ||||| || || |||||||||||||| | ||| || |||||||||||||| |||| |||| ||| |||||| | |||||| |||| |
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| T |
2322638 |
gaaatagcaccggccgcagatcctatcaaaagggtttcgatgtttccaatcttctcttgtttaaaaactttcttgtaaactttccttaaagtgtcatagg |
2322737 |
T |
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| Q |
119 |
caaagtaattggtagccgaatatggaataactccaataagactaggtgtcaagcctctgtaaagttctgcagggccctcttctttaattattttcacgaa |
218 |
Q |
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||||||| |||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||||||||| ||||||||||||||| |
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| T |
2322738 |
caaagtagttggtagcagaatatggaatgactccaataagactaggtgcaaggcctctgtaaagttctgaagcaccctcttctcgaattattttcacgaa |
2322837 |
T |
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| Q |
219 |
agcgtcaaggagaccattgtaaacacctctctg |
251 |
Q |
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| T |
2322838 |
cgcgtcaaatagaccgttataaacacctctctg |
2322870 |
T |
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