View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10036_low_2 (Length: 564)
Name: NF10036_low_2
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10036_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 51214296 - 51214840
Alignment:
| Q |
1 |
aaaggtttgtgccttacacaatgtgcttcaattgtgtcacaatgcatttttgtctctaaatttatttagtacatattttgtttctatatgaaatttgtac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214296 |
aaaggtttgtgccttacacaatgtgcttcaattgcgtcacaatgcatttttgtctctaaatttatttagtacatattttgtttctatatgaaatttgtac |
51214395 |
T |
|
| Q |
101 |
taatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaactatacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
51214396 |
taatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaactatacgaggaagcaagtcaagtagcgaacgacgcagtagggaatatca |
51214495 |
T |
|
| Q |
201 |
gaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaagaaatgtgtagtaccattccagacaggaaaaaggcagggtttagtcag |
300 |
Q |
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| T |
51214496 |
gaacagtttctgctttctgtgccgaagagaaagtgatggaattataccagaagaaatgtgtagtaccattccagacaggaaaaaggcagggtttagtcag |
51214595 |
T |
|
| Q |
301 |
tggaactggttttgggttagcaatcttctttctgttttgtgtctatgcaatcagtttttatgctggcgcccaacttattgagaatggcaaaacttcgatg |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214596 |
tggaactggttttgggttagcaatcttctttctgttttgtgtctatgcaatcagtttttatgctggcgcccaacttattgagaatggcaaaacttcgatg |
51214695 |
T |
|
| Q |
401 |
tcaggagtttttcaagtaagttacggtcccaactcggaggccatttcagatatagtgctctttggttgaactctgagctcatcacattcttttagcatta |
500 |
Q |
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| T |
51214696 |
tcaggagtttttcaagtaagttacggtcccaactcggaggccatttcagatatagtgctctttggttgaactctgagctcatcacattcttttagcatta |
51214795 |
T |
|
| Q |
501 |
aacatttaatttcttttcaggtatttttctctctcacaacggcag |
545 |
Q |
| |
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| T |
51214796 |
aacatttaatttcttttcaggtatttttctctctcacaacggcag |
51214840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 29935578 - 29935477
Alignment:
| Q |
145 |
acagaaactatacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaatta |
244 |
Q |
| |
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||||||| | |||||||||||||||||||| ||||| ||||| |||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
29935578 |
acagaaattgtacgaggaagcaagtcaagtggcaaatgatgcggtagggtgtataagaacagtttcttctttctgtgctgaagagaaggtgatggaatta |
29935479 |
T |
|
| Q |
245 |
ta |
246 |
Q |
| |
|
|| |
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|
| T |
29935478 |
ta |
29935477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 51201393 - 51201481
Alignment:
| Q |
158 |
gaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattata |
246 |
Q |
| |
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||||||||||||||||| || || ||||||||||||| ||| ||||||||| || |||||||| | ||||||||||||||||||||||| |
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| T |
51201393 |
gaggaagcaagtcaagtggcgaatgatgcagtagggagtataagaacagttgcttctttctgttctgaagagaaggtgatggaattata |
51201481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 51147431 - 51147532
Alignment:
| Q |
145 |
acagaaactatacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaatta |
244 |
Q |
| |
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||||||| | |||||||||||||||||||| ||||| ||||| ||||||| ||| ||||| ||||| |||| ||||| || |||||||||||||||||| |
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| T |
51147431 |
acagaaattgtacgaggaagcaagtcaagtggcaaatgatgctgtagggagtataagaactgtttcctctttttgtgctgaggagaaggtgatggaatta |
51147530 |
T |
|
| Q |
245 |
ta |
246 |
Q |
| |
|
|| |
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|
| T |
51147531 |
ta |
51147532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 51158602 - 51158701
Alignment:
| Q |
161 |
gaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaagaaatgtg |
260 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||||| || ||||||||| || |||| ||||| ||| ||||||| |||||||||||| || | ||||||| |
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| T |
51158602 |
gaagcaagtcaagtggcaaatgatgctgtagggagcataagaacagttgcttctttttgtgctgaaaagaaggtaatggaattatacaagcaaaaatgtg |
51158701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 55 - 423
Target Start/End: Complemental strand, 49735760 - 49735391
Alignment:
| Q |
55 |
tctaaatttatttagtacatattttg-tttctatatgaaatttgtactaatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaact |
153 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| |||| |||||||||| |||||||||||||||| |||||||||| |||||||| |||||||| |
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| T |
49735760 |
tctaaatttatttagtacatattttgctttatatatttaattagtactaatctccatttgacatgatgttactatgctctatatatgtttgacagaaaca |
49735661 |
T |
|
| Q |
154 |
atacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaag |
253 |
Q |
| |
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|| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||| |
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| T |
49735660 |
gtatgaggaagcaagtcaagtagcgaatgatgcagtagggaatatcagaacagtttccgctttctgtgctgaagagaaggtgatggagttataccaaaag |
49735561 |
T |
|
| Q |
254 |
aaatgtgtagtaccattccagacaggaaaaaggcagggtttagtcagtggaactggttttgggttagcaatcttctttctgttttgtgtctatgcaatca |
353 |
Q |
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||||||||||||||| | ||||||||||||||||||||| |||| |||||| ||||||||| ||| ||||||||||| |||| ||||| |||||| || |
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| T |
49735560 |
aaatgtgtagtaccagtacagacaggaaaaaggcagggtatagttagtggagttggttttggcttatcaatcttctttatgttctgtgtttatgcatgca |
49735461 |
T |
|
| Q |
354 |
gtttttatgctggcgcccaacttattgagaatggcaaaacttcgatgtcaggagtttttcaagtaagtta |
423 |
Q |
| |
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||||||||||||| || |||||| || ||||||||||||| || || |||| ||||||||||||||||| |
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| T |
49735460 |
gtttttatgctggagcacaacttgttaagaatggcaaaacctcaatatcagatgtttttcaagtaagtta |
49735391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 36287746 - 36287848
Alignment:
| Q |
158 |
gaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaagaaat |
257 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || | || || ||||||||| || |||||||||| ||||||||||| ||||| || ||||| || |||| |
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| T |
36287746 |
gaggaagcaagtcaagtggcaaatgatgctgtgagtaacattagaacagttgcttctttctgtgctgaagagaaggttatggacttgtaccaaaaaaaat |
36287845 |
T |
|
| Q |
258 |
gtg |
260 |
Q |
| |
|
||| |
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|
| T |
36287846 |
gtg |
36287848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 545
Target Start/End: Complemental strand, 49735215 - 49735145
Alignment:
| Q |
479 |
tcatcacattcttttagcattaaacatttaatttc----ttttcaggtatttttctctctcacaacggcag |
545 |
Q |
| |
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|||||||||| || |||||| || ||||||||||| ||||||||| |||||||||||||||| ||||| |
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|
| T |
49735215 |
tcatcacattgttctagcatcaagcatttaatttcctaattttcaggtgtttttctctctcacaatggcag |
49735145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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