View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10036_low_4 (Length: 540)
Name: NF10036_low_4
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10036_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 129 - 529
Target Start/End: Original strand, 37356696 - 37357096
Alignment:
| Q |
129 |
cagaaatgatatccaaacacacattttcagacacaaatataacaacagagataatctcgtaatttcgactaagatttaggggtataattggattttcaga |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37356696 |
cagaaatgatatccaaacacacattttcagacacaaatacaacaccagggataatctcgtaatttcgactaagatttaggggtataattggattttcagc |
37356795 |
T |
|
| Q |
229 |
tgcaacttctctcttttatcgtcactcttctttctttctccccctccatctctaaacagtaaccacggttcagactttaccaccaccgtcgtcggccgtc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37356796 |
tgcaacttctctcttttatcgtcactcttctttctttctccccctcaatctctaaacagtaaccacggttcagactttaccaccaccgtcgtcggccgtc |
37356895 |
T |
|
| Q |
329 |
gacatcagtcaccactccgccgtcctaatccaccacagaatagcaacccctattcgcaagctcgtccatcaccaccaccgatgagagaccgggctagaga |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37356896 |
gacatcagtcaccactccgccgtcctaatccaccactgaatcgcaacccctcttcgcaagctcgtccatcaccaccaccgatgagagaccgggctagaga |
37356995 |
T |
|
| Q |
429 |
atattccggcgaagtgcaagtgcaactaccggctgacctttcagatctgacatcaatccatcgcgacgaccatgactttcatctcactgaccgtcgtctc |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |
|
|
| T |
37356996 |
atattccggcgaagtgcaagtgcaactaccggctgacctttcagatctgacatcaatccatcgcgacgaccacgactttcatctcatcggccgtcgtctc |
37357095 |
T |
|
| Q |
529 |
t |
529 |
Q |
| |
|
| |
|
|
| T |
37357096 |
t |
37357096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 46070802 - 46070696
Alignment:
| Q |
129 |
cagaaatgatatccaaacacacattttcagacacaaatataacaacagagataatctcgtaatttcgactaagatttaggggtataattggattttcaga |
228 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||||| |||| ||| || ||| |||||||||| ||| | | | ||||||||| |||||||||||| |
|
|
| T |
46070802 |
cagaaatgataactaaacacactttttcagacacaaatacaacatcagggacaatttcgtaatttccactgaca-taaggggtatacttggattttcagc |
46070704 |
T |
|
| Q |
229 |
tgcaactt |
236 |
Q |
| |
|
|||||||| |
|
|
| T |
46070703 |
tgcaactt |
46070696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 129 - 492
Target Start/End: Complemental strand, 16302114 - 16301733
Alignment:
| Q |
129 |
cagaaatgatatccaaacacacattttcagacacaaatataacaacagagataatctcgtaatttcgactaagatttaggggtataattggattttcaga |
228 |
Q |
| |
|
||||||||||||| |||||||||| | |||||||||||| |||| || | |||||||||||||| ||| | || ||||| |||| ||||| |||||| |
|
|
| T |
16302114 |
cagaaatgatatctaaacacacatctccagacacaaatacaacactagggtcaatctcgtaatttccactcaaatctagggatatatttggaatttcagc |
16302015 |
T |
|
| Q |
229 |
tgcaactt----ctctcttttatcgtcactcttctt---tctttctccccct-ccatctctaaacagtaaccacggttcagact--------ttaccacc |
312 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||| |||||||||| || |||||||| |||||||| || ||||||| |||||||| |
|
|
| T |
16302014 |
tgcaacctttctctctcttttatcgtccttcttcttctttctttctcccacttccatctctcaacagtaaaca---ttcagacccttaccagttaccacc |
16301918 |
T |
|
| Q |
313 |
accgtcgtcggccgtcgacatcagtcaccactccgccgtcctaatccaccacagaatagcaacccctattcgcaagctcgtccatcaccaccacc--gat |
410 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||| | |||||||||||||| |||| ||| ||||| ||| | | ||||||||||||||||||| | |
|
|
| T |
16301917 |
accatcgtcggccgatgacatcagtcaccactccggcctcctaatccaccaccgaatcgcagcccctcttctctaactcgtccatcaccaccaccagttt |
16301818 |
T |
|
| Q |
411 |
gagagaccgggctagagaatattccggcgaa---gtgcaagtgcaactaccggctgacctttcagatctgacatcaatccatcgc |
492 |
Q |
| |
|
|| ||||| ||| |||||| ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16301817 |
gaaagaccaggccagagaaaattccggcgaagaggagcaagtgcaatcaccggctgacctttcagatctgacatcaatccatcgc |
16301733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 133 - 416
Target Start/End: Original strand, 51790540 - 51790815
Alignment:
| Q |
133 |
aatgatatccaaacacacattttcagacacaaatataacaacagagataatctcgtaatttcgactaagatttaggggtataattggattttcagatgca |
232 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| || ||| ||| | || ||||||||||| | ||| || |||||||||||||| ||||||| |||| |
|
|
| T |
51790540 |
aatgatatataaacacacattttttgacacaaaaatgacatcaggggcaaactcgtaatttccaataaaatctaggggtataattgatttttcagctgca |
51790639 |
T |
|
| Q |
233 |
acttctctcttttatcgtcactcttctttctttctccccctccatctctaaacagtaaccacggttcagactttaccaccaccgtcgtcggccgtcgaca |
332 |
Q |
| |
|
|| |||| |||||||| || ||||| |||||| ||| |||||| ||| |||| ||| |||||||| |||||||| | | || |||||||||| |
|
|
| T |
51790640 |
acccctct---ttatcgtct-tcctcttt-tttctctccc---atctctgaactgtaaacacagttcagaccttaccaccgcatttttcagccgtcgaca |
51790731 |
T |
|
| Q |
333 |
tcagtcaccactccgccgtcctaatccaccacagaatagcaacccctattcgcaagctcgtccatcaccaccaccgatgagaga |
416 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |||||| | ||| | |||||||| |||||||||||| ||||||| |
|
|
| T |
51790732 |
tcagtcaccaacccgccgtcctaatccaccaccgaatcgcaacctttcttctccagctcgtcaatcaccaccaccagtgagaga |
51790815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 4074683 - 4074785
Alignment:
| Q |
18 |
ttatccaagtgacattgtactattacaagactttattcagttgattgtctccaactcatcaatcacatctaaaaatctatttgaattgatttatttgagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
4074683 |
ttatccaagtgacattgtactattacgagactttattcaattgattgtctccggctcatcaatcatatctaaaaatctatttgaattgatttatttgaat |
4074782 |
T |
|
| Q |
118 |
tta |
120 |
Q |
| |
|
||| |
|
|
| T |
4074783 |
tta |
4074785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 300
Target Start/End: Complemental strand, 10902649 - 10902482
Alignment:
| Q |
129 |
cagaaatgatatccaaacacacattttcagacacaaatataacaacagagataatctcgtaatttcgactaagatttaggggtataattggattttcaga |
228 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||||||||| ||| ||| | || ||| ||||||| | ||| || |||||||||||||| ||||||| |
|
|
| T |
10902649 |
cagaaatgatatataaacacgtatttttagacacaaatacgacatcaggggcaaactcataatttccattaaaatctaggggtataattgatttttcagc |
10902550 |
T |
|
| Q |
229 |
tgcaacttctctcttttatcgtcactcttctttctttctccccctccatctctaaacagtaaccacggttca |
300 |
Q |
| |
|
|||||| ||||||| |||||||| || |||||||||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
10902549 |
tgcaacctctctctcttatcgtc-ttcatctttctttctccc---ccatctctaaacagtaaacacagttca |
10902482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 416
Target Start/End: Original strand, 11933333 - 11933427
Alignment:
| Q |
321 |
cggccgtcgacatcagtcaccactccgccgtcctaatccaccacagaatagcaacccctattcgcaagctcgtccatcaccaccaccgatgagaga |
416 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||| ||| | | |||||| ||||||||||||| ||||||| |
|
|
| T |
11933333 |
cggccgtcgacatcagtcaccaccccgccgtc-taatccaccaccgaatcgcaacccctcttctccaactcgtcaatcaccaccaccggtgagaga |
11933427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 11933111 - 11933223
Alignment:
| Q |
130 |
agaaatgatatccaaacacacattttcagacacaaatataacaacagagataatctcgtaatttcgactaagatttaggggtataattggattttcagat |
229 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||| | ||| |||| ||||||||| |||| | ||| || |||||||||||||| |||| ||| | |
|
|
| T |
11933111 |
agaaatgatatctaaacacacatttttgggcacaaagacgacaccagatgcaatctcgtagtttccaataaaatctaggggtataattgaatttacagct |
11933210 |
T |
|
| Q |
230 |
gcaacttctctct |
242 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11933211 |
gcaacttctctct |
11933223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 11933279 - 11933324
Alignment:
| Q |
257 |
tctttctttctccccctccatctctaaacagtaaccacggttcagac |
303 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
11933279 |
tctttctttctcccc-tccatctctaaacagtaaacacagttcagac |
11933324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University