View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10036_low_5 (Length: 531)
Name: NF10036_low_5
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10036_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 43989343 - 43989852
Alignment:
| Q |
1 |
atgcgatgttggctctgcagaaagaccaattgataccatatttaaattccataaagctatacgtaaagacttggagtatttagatgttgaatctggaaag |
100 |
Q |
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| T |
43989343 |
atgcgatgttggctctgcagaaagaccaattgataccatatttaaattccataaagctatacgtaaagacttggagtatttagatgttgaatctggaaag |
43989442 |
T |
|
| Q |
101 |
ctgagtgatagtgatgagaccattattcggcaatttagtggaaggtttcgtcttttgtggggtttatatagagctcatagtaacgcagaagatgatatag |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43989443 |
ctgagtgatagtgacgagaccattattcggcaatttagtggaaggtttcgtcttttgtggggtttatatagagctcatagtaacgcagaagatgatatag |
43989542 |
T |
|
| Q |
201 |
tatttccagcattagaatccaaagaggcccttcacaatgtgagccattcatacatgttggaccataagcaggaagaacaattgtttgaagatatttcctt |
300 |
Q |
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| T |
43989543 |
tatttccagcattagaatccaaagaggcccttcacaatgtgagccattcatacatgttggaccataagcaggaagaacaattgtttgaagatatttcctt |
43989642 |
T |
|
| Q |
301 |
cgttctttctgagttttctgtccttcatgaagccttgcagttgacccatatggcagacaatttgagtgatagtaattttggaacttctgacgtcaatgat |
400 |
Q |
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| T |
43989643 |
cgttctttctgagttttctgtccttcatgaagccttgcagttgacccatatggcagacaatttgagtgatagtaattttggaacttctgacgtcaatgat |
43989742 |
T |
|
| Q |
401 |
ggtgatgatgtcaagaagtataacgaacttgcaacaaagctccaggggatgtgtaaatccataagagtgaccctggatcagcatattttcagagaagagc |
500 |
Q |
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| T |
43989743 |
ggtgatgatgtcaagaagtataacgaacttgcaacaaagctccaggggatgtgtaaatccataagagtgaccctggatcagcatattttcagagaagagc |
43989842 |
T |
|
| Q |
501 |
gtgaactctg |
510 |
Q |
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| T |
43989843 |
gtgaactctg |
43989852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 510
Target Start/End: Original strand, 31309761 - 31310266
Alignment:
| Q |
5 |
gatgttggctctgcagaaagaccaattgataccatatttaaattccataaagctatacgtaaagacttggagtatttagatgttgaatctggaaagctga |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |
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| T |
31309761 |
gatgttggctctgcagaaagaccaattgataccatatttaaattccataaagctatacgcatagatttggagtatttagatgttgaatctggaaagcttt |
31309860 |
T |
|
| Q |
105 |
gtgatagtgatgagaccattattcggcaatttagtggaaggtttcgtcttttgtggggtttatatagagctcatagtaacgcagaagatgatatagtatt |
204 |
Q |
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| T |
31309861 |
gtgatggcgatgaagcaactatccggcaatttactggaagatttcgtcttttgtggggtttatacagagctcatagtaatgctgaagacgatatagtttt |
31309960 |
T |
|
| Q |
205 |
tccagcattagaatccaaagaggcccttcacaatgtgagccattcatacatgttggaccataagcaggaagaacaattgtttgaagatatttccttcgtt |
304 |
Q |
| |
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||| ||||| |||||||||||| | ||||| ||||||||||||||||||| | | || |||||| |||||| | || |||||||||||||| | ||| |
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| T |
31309961 |
tcctgcattggaatccaaagagacacttcataatgtgagccattcatacacgcttgatcataaggcagaagaaaagttatttgaagatatttcttgtgtt |
31310060 |
T |
|
| Q |
305 |
ctttctgagttttctgtccttcatgaagccttgcagttgacccatatggcagacaatttgagtgatagtaattttggaacttctgacgtcaatgatggtg |
404 |
Q |
| |
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||||||||| | ||||||||||||||||| |||||| |||||| || |||| |||| ||||| ||||| |||| ||||| | |||||| ||| |
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| T |
31310061 |
ctttctgagctctctgtccttcatgaagcattgcagagtacccatttgtcagaggatttaagtgaacctaattcgggaatatctgatgctaatgatagtg |
31310160 |
T |
|
| Q |
405 |
atgatgtcaagaagtataacgaacttgcaacaaagctccaggggatgtgtaaatccataagagtgaccctggatcagcatattttcagagaagagcgtga |
504 |
Q |
| |
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||||| ||| |||||||| || |||||||| ||||| || |||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||| || |
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| T |
31310161 |
atgatatcagaaagtataatgagcttgcaactaagctacaagggatgtgtaaatctatacgagtgacactggatcagcatattttcagggaagagctcga |
31310260 |
T |
|
| Q |
505 |
actctg |
510 |
Q |
| |
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|||||| |
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|
| T |
31310261 |
actctg |
31310266 |
T |
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