View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10036_low_6 (Length: 452)
Name: NF10036_low_6
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10036_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 12 - 434
Target Start/End: Original strand, 14644841 - 14645261
Alignment:
| Q |
12 |
taatgtattgaacaaagaaaattagtctccttaaacaaccatcaatccattctgtgtttaagcaagactatgtatacctacttctcagataacaaaaacc |
111 |
Q |
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| T |
14644841 |
taatgtattgaacaaagaaaattagtctccttaaacaaccatcaagccatt--gtgtttaagcaagactatgtatacctacttctcagataacaaaaacc |
14644938 |
T |
|
| Q |
112 |
agttatgaagtttttctaaaatgtaaatttcatggtgtctttaacaatagcataatcatcctcttaatataattttagttatcaatattatcaaaccaat |
211 |
Q |
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| T |
14644939 |
agttatgaagtttttctaaaatgtaaatttcatggtgtctttaacaatagcataatcatcctcttaatataattttagttatcaatattatcaaaccaat |
14645038 |
T |
|
| Q |
212 |
atagaaacaccatagtgtacacgcctcaaagcatctcattagttagtctttggttgtatacttgcatagcaagtaaagtacatagagtgtatataaatat |
311 |
Q |
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| T |
14645039 |
atagaaacaccatagtgtacacgcctcaaagcatctcattagttagtcattggttgtatacttgcatagcaagtaaagtacatagagtgtatataaatat |
14645138 |
T |
|
| Q |
312 |
catgtaaactaagtttgctaataaaatttacatcttcataatcatatcagcaaatctaaagcttgcagtgaaaacaatcactactaagctaataaacagt |
411 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14645139 |
catgtaaactaagtttgctaataaaaattacatcttcataatcatatcagcaaatctaaagcttgcagtgaaaacaatcactactaagctaataaacagt |
14645238 |
T |
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| Q |
412 |
ataatcaacaacgtgtcggtaaa |
434 |
Q |
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| T |
14645239 |
ataatcaacaacgtgtcggtaaa |
14645261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 14664639 - 14664671
Alignment:
| Q |
294 |
tagagtgtatataaatatcatgtaaactaagtt |
326 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
14664639 |
tagagtgtatataaatatcatgtaaactcagtt |
14664671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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