View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10036_low_7 (Length: 431)

Name: NF10036_low_7
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10036_low_7
NF10036_low_7
[»] chr2 (2 HSPs)
chr2 (101-421)||(18031190-18031506)
chr2 (11-51)||(18031100-18031140)
[»] chr4 (1 HSPs)
chr4 (113-276)||(55156474-55156642)
[»] chr3 (4 HSPs)
chr3 (101-275)||(29642020-29642198)
chr3 (145-195)||(4803977-4804027)
chr3 (145-192)||(10535703-10535750)
chr3 (278-312)||(48101527-48101561)
[»] chr7 (2 HSPs)
chr7 (107-176)||(22002453-22002522)
chr7 (296-421)||(22002144-22002269)
[»] chr8 (2 HSPs)
chr8 (105-201)||(32309433-32309529)
chr8 (281-418)||(32309130-32309266)
[»] chr6 (5 HSPs)
chr6 (105-201)||(33364663-33364759)
chr6 (281-418)||(33364360-33364496)
chr6 (278-313)||(22208490-22208525)
chr6 (278-320)||(16592721-16592763)
chr6 (280-330)||(33164133-33164183)
[»] chr1 (7 HSPs)
chr1 (105-201)||(30330131-30330227)
chr1 (281-418)||(30330394-30330530)
chr1 (145-192)||(25626139-25626186)
chr1 (278-312)||(9934245-9934279)
chr1 (280-330)||(24208117-24208167)
chr1 (280-330)||(45027897-45027947)
chr1 (280-330)||(45032745-45032795)
[»] scaffold0009 (1 HSPs)
scaffold0009 (145-192)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 101 - 421
Target Start/End: Original strand, 18031190 - 18031506
Alignment:
Q  101 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  18031190 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttaaaagagatataaaatgttttcaatgtgataacagaa 18031289  T
Q  201 aacaatatgacaata-ttcttttcataatgtaaacataatggaatgagctttcagttttcttgtacccacacctcacatcattttggcatcatgctcttc 299  Q
    || |||||||||||| |||||||||||||||||| |||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||||||||||    
T  18031290 aagaatatgacaatacttcttttcataatgtaaatataatggaatgagcttccaattttcttgtccccacacctcacatctttttgacatcatgctcttc 18031389  T
Q  300 atatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaatgtccctccaattctcaac 399  Q
    ||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  18031390 atatgactacttatttgttaattattcttcc-----aacaattagctcttcaaacaccaaatacaatttttttaccaaaaacgtccctcctattctcaac 18031484  T
Q  400 ttaaagtctttgggtgtctctg 421  Q
    ||||||||||  ||||||||||    
T  18031485 ttaaagtcttctggtgtctctg 18031506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 18031100 - 18031140
Alignment:
Q  11 tggacatcagcaactcttggtcctggtggtcatcgttactc 51  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  18031100 tggacatcaacaactcttggtcatggtggtcatcgttactc 18031140  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 55156474 - 55156642
Alignment:
Q  113 caagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaaacaatatgaca 212  Q
    |||| |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  55156474 caagtttattccatttttcttcattttcgcaatcacattaaaacacaatttgaaagagatataaaatgttttcaatgtgataacggaaaagaatatgaca 55156573  T
Q  213 ata-ttcttttcataa----tgtaaacataatggaatgagctttcagttttcttgtacccacacctcac 276  Q
    ||| ||||||  ||||    |||||||| ||||||||||||||   |||||||||| | ||||||||||    
T  55156574 atacttctttctataatttctgtaaacaaaatggaatgagcttctggttttcttgtcctcacacctcac 55156642  T

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Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 29642020 - 29642198
Alignment:
Q  101 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaa 200  Q
    ||||| ||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||    
T  29642020 gcacacaaatctcaagctttttccacttttctttattttcgcaatcacattaaaacacaatttaaaagagatatacaatgttttcaatgtgataacggaa 29642119  T
Q  201 aacaatatgacaa-tattcttttcataa----tgtaaacataatggaatgagctttcagttttcttgtacccacacctca 275  Q
    || |||||||||| | |||||| |||||    |||||||| ||||||| |||||| |||||||||||| | |||||||||    
T  29642120 aataatatgacaattcttctttccataatctttgtaaacaaaatggaa-gagcttccagttttcttgtcctcacacctca 29642198  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 4804027 - 4803977
Alignment:
Q  145 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataa 195  Q
    |||||||||||||||||||||| | || ||||||||||||||| |||||||    
T  4804027 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtgataa 4803977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 10535750 - 10535703
Alignment:
Q  145 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 192  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  10535750 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 10535703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 48101561 - 48101527
Alignment:
Q  278 tcattttggcatcatgctcttcatatggctactta 312  Q
    ||||||||||||||||||||||| |||||||||||    
T  48101561 tcattttggcatcatgctcttcaaatggctactta 48101527  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 22002522 - 22002453
Alignment:
Q  107 aaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataa 176  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||    
T  22002522 aaatctcaagcttattccacttttattcattttcctaatcaaattaaaacaaaatttgaaagagatataa 22002453  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 421
Target Start/End: Complemental strand, 22002269 - 22002144
Alignment:
Q  296 cttcatatggctacttatttgttaattattcttccaaccaa-acaattagctcttcaaacaccaaatacaattttttaaccaaaaatgtccctccaattc 394  Q
    ||||||||| | ||||||||||||| ||||||||||||||| | || |||||||| |||| |||| ||| |||  ||| | ||| || | ||||| ||||    
T  22002269 cttcatatgaccacttatttgttaaatattcttccaaccaacataagtagctcttaaaaccccaactacgattccttatcaaaatat-ttcctcctattc 22002171  T
Q  395 tcaacttaaagtctttgggtgtctctg 421  Q
    ||| ||||||||| | |||||||||||    
T  22002170 tcatcttaaagtcatcgggtgtctctg 22002144  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 32309529 - 32309433
Alignment:
Q  105 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 201  Q
    ||||||| |||||| | |||| |||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  32309529 ataaatcacaagctcactccatttttctccaattttgtaatcacattaaaacacaatttgaaagagatattaaatgttttcaatgtgataacggaaa 32309433  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 418
Target Start/End: Complemental strand, 32309266 - 32309130
Alignment:
Q  281 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 380  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  32309266 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 32309168  T
Q  381 tgtccctccaattctcaacttaaagtctttgggtgtct 418  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  32309167 tctccatcctactctcatcttaaagtctttggatgtct 32309130  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 33364759 - 33364663
Alignment:
Q  105 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 201  Q
    ||||||| |||||| | |||| |||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  33364759 ataaatcacaagctcactccatttttctccaatttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 33364663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 418
Target Start/End: Complemental strand, 33364496 - 33364360
Alignment:
Q  281 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 380  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  33364496 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 33364398  T
Q  381 tgtccctccaattctcaacttaaagtctttgggtgtct 418  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  33364397 tctccatcctactctcatcttaaagtctttggttgtct 33364360  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 22208525 - 22208490
Alignment:
Q  278 tcattttggcatcatgctcttcatatggctacttat 313  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22208525 tcattttggcatcatgctcttcaaatggctacttat 22208490  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 16592721 - 16592763
Alignment:
Q  278 tcattttggcatcatgctcttcatatggctacttatttgttaa 320  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||    
T  16592721 tcattttggcatcatgctcttcacatggcaacttatatgttaa 16592763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 33164133 - 33164183
Alignment:
Q  280 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 330  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  33164133 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 33164183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 30330131 - 30330227
Alignment:
Q  105 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 201  Q
    ||||||| |||||| | |||| |||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  30330131 ataaatcacaagctcactccatttttctccaatttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 30330227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 418
Target Start/End: Original strand, 30330394 - 30330530
Alignment:
Q  281 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 380  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  30330394 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 30330492  T
Q  381 tgtccctccaattctcaacttaaagtctttgggtgtct 418  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  30330493 tctccatcctactctcatcttaaagtctttggctgtct 30330530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 25626186 - 25626139
Alignment:
Q  145 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 192  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  25626186 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 25626139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 9934279 - 9934245
Alignment:
Q  278 tcattttggcatcatgctcttcatatggctactta 312  Q
    ||||||||||||||||||||||| |||||||||||    
T  9934279 tcattttggcatcatgctcttcaaatggctactta 9934245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 24208117 - 24208167
Alignment:
Q  280 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 330  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  24208117 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 24208167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 45027897 - 45027947
Alignment:
Q  280 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 330  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  45027897 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 45027947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 45032745 - 45032795
Alignment:
Q  280 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 330  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  45032745 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 45032795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 89640 - 89687
Alignment:
Q  145 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 192  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  89640 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 89687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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