View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10036_low_9 (Length: 391)
Name: NF10036_low_9
Description: NF10036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10036_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 9072892 - 9073253
Alignment:
| Q |
8 |
atggagtttggggaattgtgtaatggaaacaatgacaattagtgataattaattagtggaaaatgggaattgaagaagaatgaggttttggtgtcttttg |
107 |
Q |
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| T |
9072892 |
atggagtttggggaattgagtaatggaaacaatgacaattagtgataattaattagtggaaaatgggaattgaagaagaatgaggttttggtgtcttttg |
9072991 |
T |
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| Q |
108 |
ctaagattatttatgaggttttggaggaaagtgaatgtttggagcatcattgaacgtcgtatgcaccatgcatgtaactaaaaagatttgttggatcggt |
207 |
Q |
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| T |
9072992 |
ctaa-attatttatgaggttttggaggaaagtgaatgtttggagcatcattgaacgtcgtatgcaccatgcatgtaactaaaaagatttgttggatcggt |
9073090 |
T |
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| Q |
208 |
tacaatttggaagaatcaagattttatatagagtagaatactgttaatatataattgtatgcattaacatttttaaatgaagggtataacaccttcgccc |
307 |
Q |
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| T |
9073091 |
tacaattttgaagaatcaagattttatatagaatagaatactgtta----ataattgtatgcattaacatttttaaatgaagggtataacaccttcgccc |
9073186 |
T |
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| Q |
308 |
tataaagtttcaagagcatccattcattctttcaccaatcttgttggagcaaatcaattagggttct |
374 |
Q |
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| T |
9073187 |
tataaagtttcaagagcatccattcattctttcaccaatcttgttggagcaaatcaattagggttct |
9073253 |
T |
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