View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10037_low_2 (Length: 282)
Name: NF10037_low_2
Description: NF10037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10037_low_2 |
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| [»] chr7 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0032 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 22862761 - 22862480
Alignment:
| Q |
1 |
tcaaatcagccccccataaggagtgacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccgattttcactctgacaccaa |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
22862761 |
tcaaatcagccccccataaggagcgacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccgattttctctctaacaccaa |
22862662 |
T |
|
| Q |
101 |
cctccgaatctccctcctcttctcaaccgcccctaggcccctaatattaaaagaaataatcttcataactaactcccacgccaaaacactccacaccgac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
22862661 |
cctccgaatctccctcctcttctcaaccgcccctagacccctaatatttaaagaaacaatcttcataactaactcccacaccaaaacaccccacaccgac |
22862562 |
T |
|
| Q |
201 |
cccacacatcctaatcctctgtctccttcctcacctccatccccctcgcctcctcaccaactacaaaacatccacgcacact |
282 |
Q |
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|||||||| ||||| |||| ||| |||||||||||||| ||||||| ||||| |||||||||| |||| |||||||||||| |
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| T |
22862561 |
cccacacaccctaaacctccgtcatcttcctcacctccaaccccctcccctccccaccaactacgaaacctccacgcacact |
22862480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 47556497 - 47556778
Alignment:
| Q |
1 |
tcaaatcagccccccataaggagtgacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccgattttcactctgacaccaa |
100 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
47556497 |
tcaaatcagccccccataaggaacgacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccggttttctctctgacaccaa |
47556596 |
T |
|
| Q |
101 |
cctccgaatctccctcctcttctcaaccgcccctaggcccctaatattaaaagaaataatcttcataactaactcccacgccaaaacactccacaccgac |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||| | |
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| T |
47556597 |
cctccgaatctccctcctcttctcaaccgcccctaagcccctaatatttaaagaaataatcttcataacttcctcccacaccaaaacaccccacaccagc |
47556696 |
T |
|
| Q |
201 |
cccacacatcctaatcctctgtctccttcctcacctccatccccctcgcctcctcaccaactacaaaacatccacgcacact |
282 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||| | || |||||||||| ||||| |||| |||| |||||||||||| |
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| T |
47556697 |
cccacacaccctaaacctctgtcaccttcctcacctctaaccacctcgcctccccaccatctacgaaacctccacgcacact |
47556778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 18814617 - 18814477
Alignment:
| Q |
26 |
acacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccgattttcactctgacaccaacctccgaatctccctcctcttctca |
125 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| | ||||||||||| ||||||| ||| | | |||||| ||||||||| ||||||| |||||| |||| |
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| T |
18814617 |
acacgaaaactcatccaccacccccaacttagtttcttgaatacacaacaccgacgacctcctctctgaaaccaacctctgaatctctctcctcatctcc |
18814518 |
T |
|
| Q |
126 |
accgcccctaggcccctaatattaaaagaaataatcttcat |
166 |
Q |
| |
|
|||| ||||| ||||| ||||||| ||||| ||||||||| |
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| T |
18814517 |
accgtccctaaccccctgatattaacagaaagaatcttcat |
18814477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 591343 - 591394
Alignment:
| Q |
25 |
gacacaaaaactcatccaccacctccaacttcgactcttgaatacataacac |
76 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| | ||||||||| |
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| T |
591343 |
gacacaaaaactcatcaaccacctccaacttcgtttcttgtagacataacac |
591394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 5388529 - 5388258
Alignment:
| Q |
11 |
cccccataaggagtgacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccgattttcactctgacaccaacctccgaatc |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||| |
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| T |
5388529 |
cccccataaggaacgacacaaaaactcatccaccaccgccaacttcgactcttgaatagataacaccgccggttttctctctgacaccaacctccggatc |
5388430 |
T |
|
| Q |
111 |
tccctcctcttctcaaccgcccctaggcccctaatattaaaagaaataatcttcataactaactcccacgccaaaacactccacaccgaccccacacatc |
210 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| | |
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| T |
5388429 |
tccctcctcttctcaaccgcccctagacccctaatattaaaagaaataatcttcataacaaactcccacaccaaaatactccacaccgaccccacacacc |
5388330 |
T |
|
| Q |
211 |
ctaatcctctgtctccttcctcacctccatccccctcgcctcctcaccaactacaaaacatccacgcacact |
282 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| ||||||||||||| ||||||| ||| | | |||||||||||| |
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|
| T |
5388329 |
ctaaacctccgtctccttccttacctccaaccccctcgcctccccaccaacaacacaccctccacgcacact |
5388258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 10798695 - 10798414
Alignment:
| Q |
1 |
tcaaatcagccccccataaggagtgacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccgattttcactctgacaccaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
10798695 |
tcaaatcagccccccataaggaacgacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccggttttctctctgacaccaa |
10798596 |
T |
|
| Q |
101 |
cctccgaatctccctcctcttctcaaccgcccctaggcccctaatattaaaagaaataatcttcataactaactcccacgccaaaacactccacaccgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||| | |
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|
| T |
10798595 |
cctccgaatctccctcctcttctcaaccgcccctaaacccctaatatttaaagaaataatcttcataacttcctcccacaccaaaacaccccacaccagc |
10798496 |
T |
|
| Q |
201 |
cccacacatcctaatcctctgtctccttcctcacctccatccccctcgcctcctcaccaactacaaaacatccacgcacact |
282 |
Q |
| |
|
|||||||| ||||| |||| ||| ||||||||||||| | || |||||||||| ||||| |||| |||| |||||||||||| |
|
|
| T |
10798495 |
cccacacaccctaaacctccgtcaccttcctcacctctaacctcctcgcctccccaccatctacgaaacctccacgcacact |
10798414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 17823772 - 17823629
Alignment:
| Q |
25 |
gacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccgattttcactctgacaccaacctccgaatctccctcctcttctc |
124 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||| ||||||||||| | || || | ||| || |||||||| |||||||||||||||||| |
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| T |
17823772 |
gacacaaaaattcatcaaccacctccaacttcgattcttgtatacataacactgtcggcttcctctcagaaaccaacctattaatctccctcctcttctc |
17823673 |
T |
|
| Q |
125 |
aaccgcccctaggcccctaatattaaaagaaataatcttcataa |
168 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||||| |
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|
| T |
17823672 |
tggcgcccctaaccccctaatattaaaagataatatcttcataa |
17823629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 49971 - 49828
Alignment:
| Q |
25 |
gacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccgattttcactctgacaccaacctccgaatctccctcctcttctc |
124 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| ||||| |||||||||| | || || | ||| || ||||||| |||||||||||||||||| |
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|
| T |
49971 |
gacacaagaactcatcaaccacctccaacttcgattcttgtatacataacaatgtcggcttcctctcagaaaccaaccaattaatctccctcctcttctc |
49872 |
T |
|
| Q |
125 |
aaccgcccctaggcccctaatattaaaagaaataatcttcataa |
168 |
Q |
| |
|
||||||||| |||||| |||||||||| | |||||||||| |
|
|
| T |
49871 |
tggcgcccctagccccctactattaaaagataacatcttcataa |
49828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 221707 - 221566
Alignment:
| Q |
25 |
gacacaaaaactcatccaccacctccaacttcgactcttgaatacataacaccgccgattttcactctgacaccaacctccgaatctccctcctcttctc |
124 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| | ||||||||| |||| | || || | ||| ||||||| |||||| |||||||||||||| |
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|
| T |
221707 |
gacacaagaactcatcaaccacctccaacttcgattattgaatacacaacatcatcggcttcctttctaacaccaatttccgaacatccctcctcttctc |
221608 |
T |
|
| Q |
125 |
aaccgcccctaggcccctaatattaaaagaaataatcttcat |
166 |
Q |
| |
|
| ||||||| || |||||||||| ||| | ||||||||| |
|
|
| T |
221607 |
tgctgcccctaaccctctaatattaatagataaaatcttcat |
221566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 48713277 - 48713345
Alignment:
| Q |
98 |
caacctccgaatctccctcctcttctcaaccgcccctaggcccctaatattaaaagaaataatcttcat |
166 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||||| || | |||||||||||||| |||||||| |
|
|
| T |
48713277 |
caacctcctaatctccctcctcttctctactgcccctaacccacgaatattaaaagaaaagatcttcat |
48713345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 23824799 - 23824850
Alignment:
| Q |
25 |
gacacaaaaactcatccaccacctccaacttcgactcttgaatacataacac |
76 |
Q |
| |
|
|||||||||| || || ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
23824799 |
gacacaaaaattcgtcaaccacctccaacttcgattcttgtatacataacac |
23824850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 30189319 - 30189251
Alignment:
| Q |
98 |
caacctccgaatctccctcctcttctcaaccgcccctaggcccctaatattaaaagaaataatcttcat |
166 |
Q |
| |
|
||||| || ||||||||||||||| || |||||||||| || | |||||||||||||| |||||||| |
|
|
| T |
30189319 |
caaccgccaaatctccctcctcttttccaccgcccctaacccacgaatattaaaagaaaatatcttcat |
30189251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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