View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10037_low_3 (Length: 251)

Name: NF10037_low_3
Description: NF10037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10037_low_3
NF10037_low_3
[»] chr2 (1 HSPs)
chr2 (1-237)||(40513438-40513674)
[»] chr4 (1 HSPs)
chr4 (13-147)||(21611600-21611734)
[»] chr1 (1 HSPs)
chr1 (45-115)||(28261535-28261605)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 40513674 - 40513438
Alignment:
Q  1 aaagagtattagtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40513674 aaagagtattagtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgtt 40513575  T
Q  101 cttttatttgccagtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40513574 cttttatttgccagtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttac 40513475  T
Q  201 atagttcagatttgtatgaagtttcgtacagcctatg 237  Q
    |||||||||||||||||||||||||||||||| ||||    
T  40513474 atagttcagatttgtatgaagtttcgtacagcttatg 40513438  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 21611600 - 21611734
Alignment:
Q  13 tattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgcc 112  Q
    |||| |||||||||||||||  ||| || |  ||||||||||| || || |||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  21611600 tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc 21611699  T
Q  113 agtggttagagaagaagtttgcattgatattggaa 147  Q
    | | |||  ||| ||||| ||||||||||||||||    
T  21611700 aatagttcaagatgaagtgtgcattgatattggaa 21611734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 28261535 - 28261605
Alignment:
Q  45 tggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgccagt 115  Q
    |||||||| ||||| |||| ||| |||||  |||| ||||||||||||||||| |||||||| || |||||    
T  28261535 tggaacaaaatattcttagcagcttgtttgatttcattgtttgtggatccacttttcttttacttaccagt 28261605  T

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