View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10037_low_6 (Length: 238)
Name: NF10037_low_6
Description: NF10037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10037_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30953400 - 30953180
Alignment:
| Q |
1 |
cttgactttgactaaaaccaccaaccttttgttatttaaaagttgtagttgagggttagttttgtaagtttctttaaattattaacactcactttgctaa |
100 |
Q |
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| T |
30953400 |
cttgactttgactaaaaccaccaaccttttgttatttaaaagttgtagttgagggttagttttgtaagtttctttaaattattaacactcactttgctaa |
30953301 |
T |
|
| Q |
101 |
tttacctccactcttctttaaatatgtgacatccattttattaattacactccctttcctatgtttgtttatccnnnnnnnncttgtgtgcgtcattttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| |
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| T |
30953300 |
tttacctccactcttctttaaatatgtgacatccattttattaattacactcactttcctatgtttgtttatccaaaaaaaacttgtgt--gtcattttg |
30953203 |
T |
|
| Q |
201 |
gaatgatgaaagtgagttcaaat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30953202 |
gaatgatgaaagtgagttcaaat |
30953180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 25485393 - 25485510
Alignment:
| Q |
28 |
tttgttatttaaaagttgtagttgagggttagttttgtaagtttctttaaattattaacactcactttgctaatttacctccactcttctttaaatatgt |
127 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| | | | |||||||||||| | |
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| T |
25485393 |
tttgttatttaaaaccagtagctgagggttagttttgtaagtttccttaaattattaacacccactttgct-atttacacctatttttctttaaatattt |
25485491 |
T |
|
| Q |
128 |
gacatccattttattaatt |
146 |
Q |
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||| |||||||||||||| |
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| T |
25485492 |
aacacccattttattaatt |
25485510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 27175522 - 27175639
Alignment:
| Q |
28 |
tttgttatttaaaagttgtagttgagggttagttttgtaagtttctttaaattattaacactcactttgctaatttacctccactcttctttaaatatgt |
127 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| || ||| |||||||||||| | ||| || ||||||||| | |
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| T |
27175522 |
tttgttatttaaaagttgtagttgagagttagttgtgtaagtttgtttaaattattatcatccacattgctaatttacacctact-ttttttaaatattt |
27175620 |
T |
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| Q |
128 |
gacatccattttattaatt |
146 |
Q |
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||| ||||||||||||| |
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| T |
27175621 |
aacactcattttattaatt |
27175639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 28598664 - 28598720
Alignment:
| Q |
49 |
ttgagggttagttttgtaagtttctttaaattattaacactcactttgctaatttac |
105 |
Q |
| |
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||||||||||||||||| | | || |||||||||| |||| ||| |||||||||||| |
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| T |
28598664 |
ttgagggttagttttgtcaatatcattaaattatttacacccaccttgctaatttac |
28598720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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