View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10038_high_19 (Length: 239)
Name: NF10038_high_19
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 379488 - 379648
Alignment:
| Q |
16 |
aacaataagtagaatccccttaaaaacgtgcattgaatcattttggtgtgaaaccaattggatttgaaagctaacttatattgcttgagaatgttggaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
379488 |
aacaataagtagaatccccttaaaaacatgcattgaatcattttggtgtgaaaccaattggatttgaaagctaacttatattgcttgagaatgttggaaa |
379587 |
T |
|
| Q |
116 |
tgataaggaatctgacgaagaagaatcacaacaagtggtagatgtttcgatggataaggat |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
379588 |
tgataaggaatctgacgaagaagaatcacaacaagtggtagatgtttcgatggataaggat |
379648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 379679 - 379745
Alignment:
| Q |
173 |
ggatctggtggaattccctgtgttgaagaaatagtcctgagtgccagtatttgacaagaaatagtcc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
379679 |
ggatctggtggaattccctgtgttgaagaaatagtcctgagtgccagtatttgacaagaaatagtcc |
379745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 6298317 - 6298367
Alignment:
| Q |
126 |
tctgacgaagaagaatcacaacaagtggtagatgtttcgatggataaggat |
176 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6298317 |
tctgatgaagaagaatcacaacaagtagtagatgtttcgatggataaggat |
6298367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 6305127 - 6305177
Alignment:
| Q |
126 |
tctgacgaagaagaatcacaacaagtggtagatgtttcgatggataaggat |
176 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6305127 |
tctgatgaagaagaatcacaacaagtagtagatgtttcgatggataaggat |
6305177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University