View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10038_high_3 (Length: 466)
Name: NF10038_high_3
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 44947631 - 44947184
Alignment:
| Q |
1 |
tcaccaccatatttgagttgcttgaatcaaaaggttccgtgaaatttgagatgttgtgcagtgcaacaatctcatatcactaaattttcctttcttgtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44947631 |
tcaccaccatatttgagttgcttgaatcaaaaggttccgtgaaatttgagatgttgtgcagtgcaacaatctcatatcactaaattttcctttcttgtat |
44947532 |
T |
|
| Q |
101 |
tattaaatcactaaatcttagattatcggtgctaaaaagctatgacaaaacaaaattatttaggttaagagatgaagtgccagtcaacagacagagtgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44947531 |
tattaaatcactaaatcttagattatcggtgctaaaaagctatgacaaaacaaaattatttaggttaagagatgaagtgccagtcaacagacagagtgcc |
44947432 |
T |
|
| Q |
201 |
acttgttttggatttgtgtgtgcattgacacaagaatgtaattttggaagagcaaaatccatcaaagcataaaataattgactctcaaagtttcttagag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44947431 |
acttgttttggatttgtgtgtgcattgacacaagaatgtaattttggaagagcaaaatccatcaaagcataaaataactgactctcaaagtttcttagag |
44947332 |
T |
|
| Q |
301 |
attctaaaataccaaatcgatcttggttggaatgaatacttaatnnnnnnngtgatattgatgagctctttcaatgctcatctaaatattatttatgtta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44947331 |
attctaaaataccaaatcgatcttggttggagtgaatacttaataaaaaaagtgatattgatgagctctttcaatgctcatctaa--attatttatgtta |
44947234 |
T |
|
| Q |
401 |
ttgaatgaagctaatggtgtttgcttcagatctatcggtgctgggaaatc |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44947233 |
ttgaatgaagctaatggtgtttgcttcagatctatcggtgctgggaaatc |
44947184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 11451370 - 11451432
Alignment:
| Q |
255 |
aaatccatcaaagcataaaataattgactctcaaagtttcttagagattctaaaataccaaat |
317 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||| |
|
|
| T |
11451370 |
aaatccatcaaagcataaaataaatgagtctcaaagtttcttagagatactaaaatcccaaat |
11451432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 450
Target Start/End: Original strand, 11451511 - 11451552
Alignment:
| Q |
409 |
agctaatggtgtttgcttcagatctatcggtgctgggaaatc |
450 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11451511 |
agctaatggtgtttgcttcagatcaatcggtgctgggaaatc |
11451552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University