View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10038_high_6 (Length: 341)

Name: NF10038_high_6
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10038_high_6
NF10038_high_6
[»] chr5 (5 HSPs)
chr5 (1-323)||(41900477-41900799)
chr5 (157-293)||(32268442-32268578)
chr5 (251-304)||(41886609-41886662)
chr5 (252-297)||(28532815-28532860)
chr5 (250-286)||(29021797-29021833)
[»] chr7 (1 HSPs)
chr7 (252-304)||(10615715-10615767)
[»] chr6 (4 HSPs)
chr6 (252-304)||(6417094-6417146)
chr6 (251-304)||(6423906-6423959)
chr6 (254-304)||(19633104-19633154)
chr6 (252-285)||(8913441-8913474)
[»] chr4 (7 HSPs)
chr4 (252-304)||(553761-553813)
chr4 (252-296)||(3437630-3437674)
chr4 (247-304)||(2391266-2391323)
chr4 (252-297)||(7308553-7308598)
chr4 (98-131)||(53761012-53761045)
chr4 (252-284)||(1755555-1755587)
chr4 (252-304)||(2381638-2381690)
[»] chr3 (3 HSPs)
chr3 (252-304)||(51763392-51763444)
chr3 (100-135)||(13469868-13469903)
chr3 (252-304)||(13469651-13469703)
[»] chr1 (2 HSPs)
chr1 (228-316)||(7555176-7555264)
chr1 (252-284)||(19467453-19467485)
[»] chr8 (4 HSPs)
chr8 (167-218)||(27923092-27923143)
chr8 (252-295)||(32151970-32152013)
chr8 (252-304)||(17635658-17635710)
chr8 (252-304)||(17642937-17642989)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 41900799 - 41900477
Alignment:
Q  1 atcaaaggttgtatcaaaacatgttaacaagatggcctcttcaagaaacttacaatttttgaacaactggaaaattaatttgtcaacatgataatgacca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41900799 atcaaaggttgtatcaaaacatgtcaacaagatggcctcttcaagaaacttacaatttttgaacaactggaaaattaatttgtcaacatgataatgacca 41900700  T
Q  101 gaaagattaaccttacggagtttaaaaagtgcaagctcctctagctcatcataattgcattgtgtggggtatctgaggtcgagaacttccaacaaaggga 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41900699 gagagattaaccttacggagtttaaaaagtgcaagctcctctagctcatcataattgcattgtgtggggtatctgagatcgagaacttccaacaaaggga 41900600  T
Q  201 aacagtcagagataagtaaaagatcgctgctgttgatataatgcatttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaa 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41900599 aacagtcagagataagtaaaagatcgctgctattgatataatgcatttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaa 41900500  T
Q  301 cccaaatgcggggatgacgcttt 323  Q
    |||||||||||||||||||||||    
T  41900499 cccaaatgcggggatgacgcttt 41900477  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 157 - 293
Target Start/End: Original strand, 32268442 - 32268578
Alignment:
Q  157 gcattgtgtggggtatctgaggtcgagaacttccaacaaagggaaacagtcagagataagtaaaagatcgctgctgttgatataatgcatttcgtaacaa 256  Q
    |||||||||||||||  ||||||| || ||||||||||| |||||||| | ||||||||||| |||||||||||| |||||||| ||||||| | |||||    
T  32268442 gcattgtgtggggtaattgaggtctaggacttccaacaaggggaaacaatgagagataagtacaagatcgctgctattgatatattgcattttggaacaa 32268541  T
Q  257 gtgagagaggtcaaagttgtaatctttttggaaaaag 293  Q
    |||||||||||||||||||||||||| || |||||||    
T  32268542 gtgagagaggtcaaagttgtaatcttcttcgaaaaag 32268578  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 41886662 - 41886609
Alignment:
Q  251 taacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    |||||| |||||||||| ||||||||||||||||||| |||| |||| ||||||    
T  41886662 taacaaatgagagaggttaaagttgtaatctttttggcaaaaactcgcaaccca 41886609  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 28532815 - 28532860
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 297  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||    
T  28532815 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcg 28532860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 29021797 - 29021833
Alignment:
Q  250 gtaacaagtgagagaggtcaaagttgtaatctttttg 286  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  29021797 gtaacaagtgagagaggtcaaagtagtaatgtttttg 29021833  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 10615715 - 10615767
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||    
T  10615715 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaaccca 10615767  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 6417094 - 6417146
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    |||||||||||||||||||||||||| |||||| ||| |||||||| ||||||    
T  6417094 aacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaaccca 6417146  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 6423906 - 6423959
Alignment:
Q  251 taacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    |||||||||||||||||||||||||| || |||| ||| |||||||| ||||||    
T  6423906 taacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaaccca 6423959  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 19633104 - 19633154
Alignment:
Q  254 caagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    ||||||||||||||||||||||||||  ||| ||| |||||||| ||||||    
T  19633104 caagtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaaccca 19633154  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 8913474 - 8913441
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatcttttt 285  Q
    ||||| ||||||||||||||||||||||||||||    
T  8913474 aacaattgagagaggtcaaagttgtaatcttttt 8913441  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 553761 - 553813
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    |||| ||||||||||||||||||||||| |||| ||| |||||||| ||||||    
T  553761 aacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaaccca 553813  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 3437674 - 3437630
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctc 296  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||    
T  3437674 aacaactgagagaggtcaaagttgtaatcttttgggagaaagctc 3437630  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 2391323 - 2391266
Alignment:
Q  247 ttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    |||| ||||||| |||||||||||| || | ||||||||||| |||||||| ||||||    
T  2391323 ttcggaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaaccca 2391266  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 7308553 - 7308598
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 297  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||||    
T  7308553 aacaagtgagacaggtcaaagttgtaatcttctgggacaaagctcg 7308598  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 53761045 - 53761012
Alignment:
Q  98 ccagaaagattaaccttacggagtttaaaaagtg 131  Q
    |||||||||||||||||||||||||| |||||||    
T  53761045 ccagaaagattaaccttacggagtttgaaaagtg 53761012  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 284
Target Start/End: Original strand, 1755555 - 1755587
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttt 284  Q
    |||| ||||||||||||||||||||||||||||    
T  1755555 aacatgtgagagaggtcaaagttgtaatctttt 1755587  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 2381690 - 2381638
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    ||||||| |||||||||||| || | ||||||||||| |||||||| ||||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaaccca 2381638  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 51763444 - 51763392
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    ||||||||||||| |||||||||||||||||||  |||||| |||| ||||||    
T  51763444 aacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaaccca 51763392  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 13469903 - 13469868
Alignment:
Q  100 agaaagattaaccttacggagtttaaaaagtgcaag 135  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13469903 agaaagattaaccttgcggagtttaaaaagtgcaag 13469868  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 13469703 - 13469651
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    ||||||||||||||||||  |||||| |||||| ||| |||||||| ||||||    
T  13469703 aacaagtgagagaggtcagcgttgtattcttttgggagaaagctcgtaaccca 13469651  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 7555176 - 7555264
Alignment:
Q  228 tgctgttgatataatgcatttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatg 316  Q
    |||| |||||| ||| ||||| | |||||||||| ||||| ||||||||||| |||| ||| |||||||| || |||| ||| ||||||    
T  7555176 tgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatg 7555264  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 19467485 - 19467453
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttt 284  Q
    |||||||||||||||||||||||||||| ||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatatttt 19467453  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 27923092 - 27923143
Alignment:
Q  167 gggtatctgaggtcgagaacttccaacaaagggaaacagtcagagataagta 218  Q
    ||||| ||||||||||| |||||||||||||||||| | | |||||||||||    
T  27923092 gggtaactgaggtcgaggacttccaacaaagggaaataatgagagataagta 27923143  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 32151970 - 32152013
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagct 295  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||    
T  32151970 aacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 17635710 - 17635658
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    |||||||||||||||||||||||||||| ||   ||| |||||||| ||||||    
T  17635710 aacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaaccca 17635658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 17642989 - 17642937
Alignment:
Q  252 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 304  Q
    |||||||||||||||||||||||||||| || | ||| |||||| | ||||||    
T  17642989 aacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaaccca 17642937  T

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