View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10038_low_10 (Length: 408)

Name: NF10038_low_10
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10038_low_10
NF10038_low_10
[»] chr1 (8 HSPs)
chr1 (23-391)||(35550030-35550398)
chr1 (142-249)||(2898628-2898735)
chr1 (127-249)||(34644492-34644614)
chr1 (157-249)||(4862078-4862170)
chr1 (83-249)||(28041142-28041308)
chr1 (127-260)||(2764394-2764527)
chr1 (83-235)||(20259812-20259964)
chr1 (152-196)||(21946842-21946886)
[»] chr6 (4 HSPs)
chr6 (83-249)||(17249320-17249486)
chr6 (68-209)||(4165922-4166063)
chr6 (58-209)||(4206586-4206737)
chr6 (159-260)||(32115633-32115734)
[»] chr5 (5 HSPs)
chr5 (24-249)||(37873594-37873819)
chr5 (24-247)||(13166866-13167089)
chr5 (83-248)||(32269812-32269977)
chr5 (93-209)||(42921663-42921779)
chr5 (83-244)||(25663047-25663208)
[»] chr3 (7 HSPs)
chr3 (93-249)||(26772684-26772840)
chr3 (83-249)||(53785635-53785801)
chr3 (56-249)||(39583217-39583410)
chr3 (93-180)||(37992327-37992414)
chr3 (83-209)||(52741527-52741653)
chr3 (83-208)||(7900825-7900950)
chr3 (83-260)||(38670895-38671072)
[»] chr7 (12 HSPs)
chr7 (93-249)||(27521397-27521553)
chr7 (83-243)||(4501191-4501350)
chr7 (58-249)||(21326828-21327019)
chr7 (83-260)||(9281146-9281328)
chr7 (83-260)||(9292117-9292299)
chr7 (83-233)||(19277235-19277385)
chr7 (79-249)||(40726491-40726661)
chr7 (96-249)||(5825199-5825352)
chr7 (56-244)||(982880-983068)
chr7 (56-249)||(28517275-28517468)
chr7 (68-249)||(43856800-43856981)
chr7 (84-249)||(45613858-45614023)
[»] chr8 (9 HSPs)
chr8 (83-249)||(38815220-38815386)
chr8 (96-249)||(36004048-36004201)
chr8 (129-260)||(3821139-3821270)
chr8 (94-235)||(24124968-24125109)
chr8 (114-249)||(121767-121902)
chr8 (83-250)||(25021829-25021996)
chr8 (56-249)||(6592502-6592694)
chr8 (52-209)||(28196158-28196315)
chr8 (93-249)||(3187896-3188051)
[»] chr4 (13 HSPs)
chr4 (24-249)||(53619512-53619737)
chr4 (93-249)||(56462131-56462287)
chr4 (128-249)||(4419189-4419310)
chr4 (94-249)||(3329922-3330077)
chr4 (127-249)||(39001323-39001445)
chr4 (137-208)||(42455676-42455747)
chr4 (153-235)||(600777-600859)
chr4 (83-193)||(50483211-50483321)
chr4 (127-260)||(53170427-53170561)
chr4 (176-249)||(23242826-23242899)
chr4 (160-249)||(23255639-23255728)
chr4 (103-204)||(43849383-43849484)
chr4 (144-248)||(16955387-16955491)
[»] scaffold0148 (1 HSPs)
scaffold0148 (68-249)||(33176-33357)
[»] chr2 (6 HSPs)
chr2 (93-249)||(41867933-41868089)
chr2 (101-249)||(17344564-17344712)
chr2 (83-235)||(28224940-28225092)
chr2 (26-249)||(4413024-4413247)
chr2 (93-233)||(9685440-9685580)
chr2 (153-249)||(13413277-13413373)
[»] scaffold0031 (1 HSPs)
scaffold0031 (175-260)||(49330-49415)
[»] scaffold0009 (1 HSPs)
scaffold0009 (94-249)||(103032-103187)
[»] scaffold0186 (1 HSPs)
scaffold0186 (101-203)||(10333-10434)
[»] scaffold0493 (1 HSPs)
scaffold0493 (93-161)||(8541-8609)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 23 - 391
Target Start/End: Original strand, 35550030 - 35550398
Alignment:
Q  23 aggcttttacggtgggacctgcaactctcaaaactgcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatt 122  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||    
T  35550030 aggcttttacggtgggacctgcaactctcaaaactgcatcaagtcaagtggctaatcataagaaagtgttttctgacaatcaacataattctatattatt 35550129  T
Q  123 tacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcatt 222  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35550130 tacgtttgacactcttggcttcctagcactataggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgtttatt 35550229  T
Q  223 aatgttgtgtttaggaggattgattttacaatctaaaaggagctagttgtataatttgttgctcatctctcttctattcctcagtaattctttgtgaata 322  Q
    ||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35550230 aatgttgtgtttaagaggattgattttacaatctaaaaagagttagttgtataatttgttgctcatctctcttctattcctcagtaattctttgtgaata 35550329  T
Q  323 ttattataaattgaatttatccaatcttgttataaattaatctaattattctcaaaaaagataccagtg 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35550330 ttattataaattgaatttatccaatcttgttataaattaatctaattattctcaaaaaagataccagtg 35550398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 2898735 - 2898628
Alignment:
Q  142 ttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggagga 241  Q
    |||||||| | ||||||||||| ||||||| | |||||| ||| ||||||| |||||||| | ||||| | || | |||| ||||||||||||| |||||    
T  2898735 ttcctagcaccagaggttgttgaccttctacatagagttcaaaagatcatgcataacaatatcatgtctcatacgatcatgaatgttgtgtttaagagga 2898636  T
Q  242 ttgatttt 249  Q
    ||||||||    
T  2898635 ttgatttt 2898628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 34644614 - 34644492
Alignment:
Q  127 tttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatg 226  Q
    ||||||||| | |||||||||||   ||||||||||| ||||||| | |||||  ||||| | ||| ||| |||||||||||| | || || ||| ||||    
T  34644614 tttgacactttcggcttcctagcatcagaggttgttgaccttctacatagagtccaaagggttatgcatatcaatgttatgtctcctaggtccatgaatg 34644515  T
Q  227 ttgtgtttaggaggattgatttt 249  Q
    ||||||||| || ||||||||||    
T  34644514 ttgtgtttacgatgattgatttt 34644492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 4862078 - 4862170
Alignment:
Q  157 gttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    ||||||| ||||||| | |||||| ||||| ||||| |||||||||| | ||||||||  | ||| ||||||||| ||| |||||||||||||    
T  4862078 gttgttgaccttctacatagagttcaaagggtcatgcataacaatgtcacgtcccttagatccatgaatgttgtgattacgaggattgatttt 4862170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 28041142 - 28041308
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    ||||||||| ||||||| ||||||| | || ||||  |||| | ||||||||| | || |||||||| | |||||  |||| ||||||| | |||||| |    
T  28041142 agaaagtgtgttctgacaatcaacaggtttttataccatttgcttttgacactttcggtttcctagcaccagaggcggttgaccttctacatagagttca 28041241  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    || | ||||| ||| |||||| ||||||  || || ||| ||||||||| | | |||||||||||||    
T  28041242 aaaggtcatgcatagcaatgtcatgtcctctaagtccatgaatgttgtgctcatgaggattgatttt 28041308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 2764527 - 2764394
Alignment:
Q  127 tttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatg 226  Q
    ||||||||| |  ||||||||||   ||||||||||| ||||||| | | |||  ||||| | ||| | | |||||||||||| |||| || ||| ||||    
T  2764527 tttgacactttcagcttcctagcatcagaggttgttgaccttctacataaagtccaaagggttatgcaaatcaatgttatgtctcttaggtccataaatg 2764428  T
Q  227 ttgtgtttaggaggattgattttacaatctaaaa 260  Q
    ||||||||| || |||||||||||| ||| ||||    
T  2764427 ttgtgtttacgatgattgattttaccatccaaaa 2764394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 20259812 - 20259964
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || ||||||| ||||||||| || ||||  |||||   |||||||| | || ||| |||| | ||||||||||| ||||||| | |||||| |    
T  20259812 agaaagcgtgttctgacaatcaacatgtttttataccatttattgttgacactttcggtttcttagcaccagaggttgttgaccttctacatagagttca 20259911  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgttta 235  Q
    || | ||||| |||  ||||| ||||| | || ||| || |||||||||||||    
T  20259912 aaaggtcatgcatagtaatgtcatgtctcataagttaataaatgttgtgttta 20259964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 21946886 - 21946842
Alignment:
Q  152 tagaggttgttggccttctaaaaagagtttaaaggatcatgtata 196  Q
    |||||||||||| | ||||| |||||||||||| |||||||||||    
T  21946886 tagaggttgttgacattctacaaagagtttaaatgatcatgtata 21946842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 17249320 - 17249486
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    ||||||||| ||||||| ||||||||| || ||||  |||| | ||||||||| |||||||||||||   |||||  |||| ||||||| | |||||  |    
T  17249320 agaaagtgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctacatagagtcca 17249419  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    |||||| ||||||| |||||||||||| | || |||||| ||||||||||||| |||||||| ||||    
T  17249420 aaggattatgtatagcaatgttatgtctcctaagttcatgaatgttgtgtttacgaggattggtttt 17249486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 4165922 - 4166063
Alignment:
Q  68 aagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggcct 167  Q
    |||||||||  ||| |||||| || ||||||| ||||||||| || ||||| |||| | ||||||||| | || |||||||| | ||||||||||| |||    
T  4165922 aagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgacct 4166021  T
Q  168 tctaaaaagagtttaaaggatcatgtataacaatgttatgtc 209  Q
    |||| | |||||||||| | ||||| || ||||||| |||||    
T  4166022 tctacatagagtttaaaaggtcatgcatgacaatgtcatgtc 4166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 4206586 - 4206737
Alignment:
Q  58 gcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagagg 157  Q
    ||||||||  |||||||||  ||| |||||| || ||||||| || |||||| || ||||| |||| | ||||||||| | || |||||||| | |||||    
T  4206586 gcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatgaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagagg 4206685  T
Q  158 ttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtc 209  Q
    |||||| ||||||| | |||||| ||| | ||||| || ||||||| |||||    
T  4206686 ttgttgaccttctacatagagttcaaaaggtcatgcatgacaatgtcatgtc 4206737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 260
Target Start/End: Complemental strand, 32115734 - 32115633
Alignment:
Q  159 tgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgattttacaatctaa 258  Q
    ||||| ||||||| |||||||| ||| | ||||| |||||||||| ||||| | || || ||| ||||||||||||| || |||||||||| | ||||||    
T  32115734 tgttgaccttctacaaagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgctatctaa 32115635  T
Q  259 aa 260  Q
    ||    
T  32115634 aa 32115633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 249
Target Start/End: Original strand, 37873594 - 37873819
Alignment:
Q  24 ggcttttacggtgggacctgcaactctcaaaactgcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattattt 123  Q
    |||||||||||| ||||   || |||| |||  |||||||||  ||||||| |  ||| |||||| || ||||||| ||||||||| || ||||  ||||    
T  37873594 ggcttttacggtaggacagacagctctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccattt 37873693  T
Q  124 acgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcatta 223  Q
     | ||||||||| ||||||||||||| | ||||||||||| ||||||| | |||||| ||||| ||||| | |||||||| ||| |   || ||  || |    
T  37873694 gcttttgacacttttggcttcctagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcagaacaatgtcatgacttctaggtctatga 37873793  T
Q  224 atgttgtgtttaggaggattgatttt 249  Q
    |||||||||||| |||||||||||||    
T  37873794 atgttgtgtttaagaggattgatttt 37873819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 13166866 - 13167089
Alignment:
Q  24 ggcttttacggtgggacctgcaactctcaaaactgcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattattt 123  Q
    |||||||||||||||||   |||| || ||| ||||||||||  |||||||||  ||| |||||| || ||||||| ||||||||| || ||||  ||||    
T  13166866 ggcttttacggtgggacagacaaccctaaaatctgcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttataccattt 13166965  T
Q  124 acgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcatta 223  Q
     | ||||||||| | |||||||||||   ||||  ||||| ||||||| | |||||  ||||| | ||| ||| ||||| |||||| | || || ||| |    
T  13166966 gcttttgacactttcggcttcctagcatcagagactgttgaccttctacatagagtccaaagggttatgcatagcaatggtatgtctcctaggtccatga 13167065  T
Q  224 atgttgtgtttaggaggattgatt 247  Q
    |||||| ||||| || ||||||||    
T  13167066 atgttgggtttacgatgattgatt 13167089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 32269812 - 32269977
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    ||||||||| ||||||| ||||||| | || ||||  |||| | ||||| ||| | |  |||||||| ||||||||||||| ||||||  |   |||| |    
T  32269812 agaaagtgtgttctgacaatcaacacgcttttataccatttgcttttgatactttcgatttcctagcactagaggttgttgaccttctgcatgaagttca 32269911  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgattt 248  Q
    || | ||||| ||| |||||| ||||| | || || ||| ||||||||||||| ||||||||||||    
T  32269912 aaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgattt 32269977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 42921779 - 42921663
Alignment:
Q  93 ttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatg 192  Q
    ||||||| ||||||||| || ||||  |||| | | ||||||| | || |||||||| | ||||||||||||||||||| | |||||| | | | |||||    
T  42921779 ttctgacaatcaacatgcttttataccatttgcttatgacactttcggtttcctagcaccagaggttgttggccttctacatagagttcagaaggtcatg 42921680  T
Q  193 tataacaatgttatgtc 209  Q
     |||||||||| |||||    
T  42921679 cataacaatgtcatgtc 42921663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 244
Target Start/End: Original strand, 25663047 - 25663208
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || ||||||  ||||||||| || ||||  |||| | ||||||||| |  ||||||||||   ||| |||||||  |||||| | |||||  |    
T  25663047 agaaagcgtgttctgataatcaacatgtttttataccatttgcttttgacactttcagcttcctagcatcagaagttgttgatcttctacatagagtcca 25663146  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattg 244  Q
    |||| | ||| ||| |||||||||||||| || || ||| ||||||| ||||| ||||||||    
T  25663147 aagggttatgcatatcaatgttatgtcccctaggtccatgaatgttgagtttacgaggattg 25663208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 249
Target Start/End: Complemental strand, 26772840 - 26772684
Alignment:
Q  93 ttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatg 192  Q
    ||||||| ||||||||| || ||||  |||| | ||||||||| |||||||||||||   |||||  |||| ||||||| | |||||  ||||||| |||    
T  26772840 ttctgacaatcaacatgcttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctatatagagtacaaaggattatg 26772741  T
Q  193 tataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
     |||||||||||||||| | || || ||| ||||||||||||| |||||||||||||    
T  26772740 cataacaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgatttt 26772684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 53785801 - 53785635
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || ||||||| ||||||||| || ||||  |||| | ||||||||| | || |||||||| | ||||||||||| ||||||| | |||||| |    
T  53785801 agaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacatagagttca 53785702  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    || | ||||| ||| |||||| ||||| | || || ||| |||||| |||||| |||||||| ||||    
T  53785701 aaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttatgtttacgaggattggtttt 53785635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 249
Target Start/End: Original strand, 39583217 - 39583410
Alignment:
Q  56 ctgcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctaga 155  Q
    ||||||||||  ||||||| |  ||| |||||| || ||||||| ||||||||| || ||||| ||||   || |||||| | || ||||||||   | |    
T  39583217 ctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgttttcgacactttcggtttcctagcatcata 39583316  T
Q  156 ggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    |||||||| ||||||  | |||||| ||||| ||||| ||| |||||| ||||| | || |||||| ||||| ||||||| |||||||||||||    
T  39583317 ggttgttgaccttctgcatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggttcatgaatgtcgtgtttacgaggattgatttt 39583410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 37992414 - 37992327
Alignment:
Q  93 ttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtt 180  Q
    ||||||| |||||||||||| ||||| |||||| |||||   | |||||||| |||| ||||||||||||| ||||||| ||||||||    
T  37992414 ttctgacaatcaacatgattttatatcatttacttttgatggttttggcttcatagcactagaggttgttgaccttctacaaagagtt 37992327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 52741527 - 52741653
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || ||||||| ||||||||| || ||||  |||| | ||||||||| |||| |||||||| | ||||||||||| ||||||| | |||||| |    
T  52741527 agaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggtttcctagcaccagaggttgttgaccttctacatagagttca 52741626  T
Q  183 aaggatcatgtataacaatgttatgtc 209  Q
    || | ||||| ||| |||||| |||||    
T  52741627 aaaggtcatgcatagcaatgtcatgtc 52741653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 7900950 - 7900825
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| |||||||||| ||||||||| || ||||  ||||   ||||||||| | |||||||||||   ||||||||||| ||||||| | |||||||     
T  7900950 agaaagcgttttctgacaatcaacatgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacatagagtttg 7900851  T
Q  183 aaggatcatgtataacaatgttatgt 208  Q
    |||||| ||  ||| |||||||||||    
T  7900850 aaggattatacatagcaatgttatgt 7900825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 260
Target Start/End: Original strand, 38670895 - 38671072
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || ||||||| ||||||||| || ||||  ||||   ||||||||| ||||||| |||||   |||||  | || ||||||| | ||||| ||    
T  38670895 agaaagcgtgttctgacaatcaacatgcttttatacaatttgtttttgacacttttggctttctagcatcagaggcggatgaccttctacatagagtcta 38670994  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgattttacaatctaaaa 260  Q
    |||  | ||| ||| |||||||||||| | || || ||| |||||||||| || |||||||| |||| | ||||||||    
T  38670995 aagagttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtgtacgaggattggttttgccatctaaaa 38671072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 93 - 249
Target Start/End: Complemental strand, 27521553 - 27521397
Alignment:
Q  93 ttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatg 192  Q
    ||||||| |||||||||  | ||||  |||||| ||||||||| |||| ||||||||   ||||||||||| ||||||| | |||||| ||| | |||||    
T  27521553 ttctgacaatcaacatgcatttatacaatttacttttgacacttttggtttcctagcatcagaggttgttgaccttctacatagagttcaaaaggtcatg 27521454  T
Q  193 tataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
     |||||||||| ||||| | || ||  || ||||||||||||| |||||||||||||    
T  27521453 cataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgaggattgatttt 27521397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 243
Target Start/End: Complemental strand, 4501350 - 4501191
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || ||||||| ||||||||| || ||||| |||| | ||||||||| |||| || ||||| | ||||||||||| ||||||| | |||||| |    
T  4501350 agaaagcgtgttctgacaatcaacatgcttttatataatttgcttttgacact-ttggttttctagcaccagaggttgttgaccttctacatagagttca 4501252  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggatt 243  Q
    || | ||||| ||| |||||| ||||| | ||  ||||| ||||||||||||| |||||||    
T  4501251 aaagttcatgcatagcaatgtcatgtctcctagattcatgaatgttgtgtttacgaggatt 4501191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 249
Target Start/End: Original strand, 21326828 - 21327019
Alignment:
Q  58 gcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagagg 157  Q
    ||||||||  ||||||| |  ||| |||||| || ||||||| ||||||||| || ||||  |||| | ||||||||| | |  |||||||| | |||||    
T  21326828 gcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcgatttcctagcaccagagg 21326927  T
Q  158 ttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
     ||||| |||| || | |||||| ||| | ||||| ||| |||||||||||| | || || ||| ||||||||||| | |||||||||||||    
T  21326928 ctgttgaccttttacatagagttcaaaaggtcatgcatagcaatgttatgtctcctaggtccatgaatgttgtgttcacgaggattgatttt 21327019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 260
Target Start/End: Original strand, 9281146 - 9281328
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || |||| || ||||||||| || |||| |||||   ||||||| | || |||||||||| | ||| ||||||| ||||||| | |||||| |    
T  9281146 agaaagcgtgttctaacaatcaacatgcttttatactatttggatttgacattttttgcttcctagcaccagatgttgttgaccttctacatagagttca 9281245  T
Q  183 aaggatcatgtata-----acaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgattttacaatctaaaa 260  Q
    |||| ||||||| |     ||||||| ||| | |||| || ||||||||||||||||||||| |||| |||| ||||| ||||    
T  9281246 aagggtcatgtacagcacaacaatgtcatgactcttaagtccattaatgttgtgtttaggagaattggttttgcaatccaaaa 9281328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 260
Target Start/End: Original strand, 9292117 - 9292299
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || |||| || ||||||||| || |||| |||||   ||||||| | || |||||||||| | ||| ||||||| ||||||| | |||||| |    
T  9292117 agaaagcgtgttctaacaatcaacatgcttttatactatttggatttgacattttttgcttcctagcaccagatgttgttgaccttctacatagagttca 9292216  T
Q  183 aaggatcatgtata-----acaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgattttacaatctaaaa 260  Q
    |||| ||||||| |     ||||||| ||| | |||| || ||||||||||||||||||||| |||| |||| ||||| ||||    
T  9292217 aagggtcatgtacagcacaacaatgtcatgactcttaagtccattaatgttgtgtttaggagaattggttttgcaatccaaaa 9292299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 19277385 - 19277235
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || ||||||| ||||||||| || ||||  |||| | ||||||||| | || |||||||| | ||||||||||| ||||||| | |||||| |    
T  19277385 agaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacatagagttca 19277286  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtt 233  Q
    || | ||||| ||| |||||| ||||| | || || ||| |||||||||||    
T  19277285 aaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtt 19277235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 40726491 - 40726661
Alignment:
Q  79 cataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagag 178  Q
    ||||| ||| ||| ||||||| ||||||||| || ||||  ||||   ||||||||| | |||||| ||||   ||||||||||| ||||||| | ||||    
T  40726491 cataataaaatgtgttctgacaatcaacatgtttttataccatttgtttttgacactttcggcttcatagcatcagaggttgttgaccttctacatagag 40726590  T
Q  179 tttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    |  ||||| | ||| ||||||||| |||||| | ||  | ||| ||||||||||||| |||||||||||||    
T  40726591 tccaaagggttatgcataacaatgctatgtctcctagatccatgaatgttgtgtttatgaggattgatttt 40726661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 5825352 - 5825199
Alignment:
Q  96 tgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtat 195  Q
    |||| ||||||||| || ||||  |||||| ||||||||| | ||| ||||||| | ||||||||||| ||||||| | |||||  ||||| | ||| ||    
T  5825352 tgacaatcaacatgtttttataccatttacttttgacactttcggcatcctagcaccagaggttgttgaccttctacatagagtcgaaagggttatgcat 5825253  T
Q  196 aacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    | |||||||||||| | || ||  ||  |||||||||||| |||||||| ||||    
T  5825252 agcaatgttatgtctcctaggtctatggatgttgtgtttacgaggattggtttt 5825199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 244
Target Start/End: Complemental strand, 983068 - 982880
Alignment:
Q  56 ctgcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctaga 155  Q
    ||||||||||  ||||||| |  ||| |||||  || ||||||| ||||||||| || ||||  |||| | ||||| ||| | || || ||||| | |||    
T  983068 ctgcgtcaagcaaagtggccaaacatgagaaatcgtgttctgacaatcaacatgcttttataccatttgcttttgatactttcggttttctagcaccaga 982969  T
Q  156 ggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattg 244  Q
    |||||||||||||||| | |||||| ||| | ||||| ||| |||||| |||||   ||||| ||| ||||||||||| | ||||||||    
T  982968 ggttgttggccttctacatagagttcaaaaggtcatgcatatcaatgtcatgtcttctatgtccatgaatgttgtgttcacgaggattg 982880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 249
Target Start/End: Original strand, 28517275 - 28517468
Alignment:
Q  56 ctgcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctaga 155  Q
    ||||||||||  ||||||| |  ||| |||||| || ||  ||| ||||||||| || ||||  |||| | ||||||||| ||| |||||||||   |||    
T  28517275 ctgcgtcaagcaaagtggccaaacatgagaaagcgtgtttagacaatcaacatgtttttataccatttgcttttgacacttttgacttcctagcatcaga 28517374  T
Q  156 ggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    |   |||| ||||||| | |||||  ||||| | ||| |||||||||||||||| | || || ||| ||||||||||||| |||||||| ||||    
T  28517375 gacagttgaccttctacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatgttgtgtttacgaggattggtttt 28517468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 43856981 - 43856800
Alignment:
Q  68 aagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggcct 167  Q
    |||||||||  ||| |||||| || || |||| |||||||||  | ||||  |||| | ||||||| | |||| |||||| | | ||||||||||| |||    
T  43856981 aagtggctagacatgagaaagcgtgttttgacaatcaacatgcgtttatacaatttgcttttgacatttttggtttcctaacaccagaggttgttgacct 43856882  T
Q  168 tctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    |||| | |||||| ||||| ||||| | |||||||| ||| | | || || ||| |||||| |||||| ||| |||||||||    
T  43856881 tctacatagagttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaattgatttt 43856800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 249
Target Start/End: Original strand, 45613858 - 45614023
Alignment:
Q  84 gaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaa 183  Q
    |||||||| ||||||| ||||||||| || ||||  ||||   ||||||||| | || |||| ||| | ||||| |||| |||||||| | |||||| ||    
T  45613858 gaaagtgtgttctgacaatcaacatgtttttataccatttgattttgacactttcggtttccaagcaccagaggctgttagccttctacatagagttcaa 45613957  T
Q  184 aggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    | | ||||| |||||||||| |  || | || || ||| ||||||||||||| |||||||| ||||    
T  45613958 aagttcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgaggattggtttt 45614023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 38815386 - 38815220
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || ||||||| ||||||||| || ||||  |||| | ||||||||| |  |||||||||| | ||||| ||||| ||||||| | |||||| |    
T  38815386 agaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgaccttctacatagagttca 38815287  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    |||| ||||| ||| |||||| ||||| | || || ||| ||||||||||||| |||||||| ||||    
T  38815286 aagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggtttt 38815220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 36004201 - 36004048
Alignment:
Q  96 tgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtat 195  Q
    |||| ||||||||| || ||||  |||||| ||||||| | ||| ||||||| | | ||||||||||| || |||||||||||||| |||| ||||| ||    
T  36004201 tgacaatcaacatgtttttataccatttacatttgacatttttgacttcctatcaccagaggttgttgaccatctaaaaagagtttcaagggtcatggat 36004102  T
Q  196 aacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    |||||  ||||||| | || || ||| |||||| | || | |||||||||||||    
T  36004101 aacaacattatgtctcataggtccatgaatgttatcttcaagaggattgatttt 36004048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 3821270 - 3821139
Alignment:
Q  129 tgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgtt 228  Q
    ||||||| ||||| ||||||  | ||||||||||| ||||||| | |||||| ||||| | ||| ||| |||||| ||||| | || |||||| ||||||    
T  3821270 tgacacttttggcatcctagaaccagaggttgttgaccttctacatagagttcaaagggtaatgcatagcaatgtcatgtctcctaggttcataaatgtt 3821171  T
Q  229 gtgtttaggaggattgattttacaatctaaaa 260  Q
     |||||| |||||||||| || |||| |||||    
T  3821170 atgtttacgaggattgatattgcaatttaaaa 3821139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 24125109 - 24124968
Alignment:
Q  94 tctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgt 193  Q
    |||||| ||||||||| || ||||  |||| | ||||||| | |||  |||||||| | ||||||||||||||||||| | | |||| ||| | |||||     
T  24125109 tctgacaatcaacatgcttttataccatttgcttttgacaattttgatttcctagcaccagaggttgttggccttctacataaagttcaaaaggtcatgc 24125010  T
Q  194 ataacaatgttatgtcccttatgttcattaatgttgtgttta 235  Q
    ||| |||||| ||||| | || || ||| |||||||||||||    
T  24125009 atagcaatgtcatgtctcataggtccatgaatgttgtgttta 24124968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 121767 - 121902
Alignment:
Q  114 tatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtccctt 213  Q
    |||||||||| | ||||| ||| ||  ||||||||||  |||| |||||| | ||||| | | |||||||| ||||||| ||| |||||| |||||   |    
T  121767 tatattatttgcttttgaaacttttaacttcctagcctcagagattgttgacattctacacaaagtttaaaagatcatgcatatcaatgtcatgtcatct 121866  T
Q  214 atgttcattaatgttgtgtttaggaggattgatttt 249  Q
    | || |||  |||||||||||| |||||||||||||    
T  121867 aagtccatggatgttgtgtttacgaggattgatttt 121902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 250
Target Start/End: Original strand, 25021829 - 25021996
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    ||||||||| |||| || ||||||||| || ||||  |||| | ||||||| | ||||||||||||| | ||||||||||| || || | | | |||| |    
T  25021829 agaaagtgtgttctcacaatcaacatgtttttataccattttcttttgacatttttggcttcctagcaccagaggttgttgaccatccacacaaagttca 25021928  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttta 250  Q
    |||| ||||| | |||||||| || || | || || ||  |||||||||||||  | |||||||||||    
T  25021929 aagggtcatgcacaacaatgtcatatctcctaggtccaggaatgttgtgtttacaatgattgatttta 25021996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 249
Target Start/End: Complemental strand, 6592694 - 6592502
Alignment:
Q  56 ctgcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctaga 155  Q
    ||||||||||  ||||||| |  ||| |||||| || |||| || |||||||||||| || |  |||| | ||||||||| |  | |||||||| | |||    
T  6592694 ctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcctagctccaga 6592595  T
Q  156 ggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    |||||||| ||||||  | |||||| ||| | ||||| || | ||||| ||||| | || |||||| ||||||||||||| ||| |||| ||||    
T  6592594 ggttgttgaccttctgcatagagttcaaaaggtcatgcat-ataatgtcatgtctcataggttcatgaatgttgtgtttacgagtattggtttt 6592502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 28196315 - 28196158
Alignment:
Q  52 aaaactgcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccc 151  Q
    |||||||| |||||| ||| |||||  ||| ||||||||| || |||  || |||||| || ||||  ||||   ||||||||| ||| ||||||||| |    
T  28196315 aaaactgcatcaagtaaagcggctaaacatgagaaagtgtgttatgataataaacatgtttttataccatttgtttttgacacttttgtcttcctagcac 28196216  T
Q  152 tagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtc 209  Q
     | ||||||||| || ||||   |||||| ||||||||||| | |||||||| |||||    
T  28196215 cataggttgttgaccatctacgtagagttcaaaggatcatgcacaacaatgtcatgtc 28196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 249
Target Start/End: Complemental strand, 3188051 - 3187896
Alignment:
Q  93 ttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatg 192  Q
    ||||||| ||||||||| || ||||  |||| | ||||| ||| | |||||||||||   ||||||||||  ||||||| | |||||  ||||| | |||    
T  3188051 ttctgacaatcaacatgcttttataccatttgcttttgaaactttcggcttcctagcatcagaggttgttaaccttctacatagagtc-aaagggttatg 3187953  T
Q  193 tataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
     ||| |||||||||||| | || || ||| ||||||||||||| ||| |||| ||||    
T  3187952 catagcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggtttt 3187896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 53619737 - 53619512
Alignment:
Q  24 ggcttttacggtgggacctgcaactctcaaaactgcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattattt 123  Q
    ||||||||| || ||||  ||||| || ||| ||||||||||  ||||||| |  ||| |||||  || ||||||| ||||||||| || ||||  ||||    
T  53619737 ggcttttacagtaggacaggcaaccctaaaagctgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccattt 53619638  T
Q  124 acgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcatta 223  Q
       ||||||||| ||| |||||||||   |||||  |||| ||||||| | ||||| |||||| | ||| |||||||||||||||| |||| || ||| |    
T  53619637 gtttttgacacttttgacttcctagcatcagaggcagttgaccttctacatagagtctaaagggttatgcataacaatgttatgtctcttaggtccatga 53619538  T
Q  224 atgttgtgtttaggaggattgatttt 249  Q
    |||||||||||| ||| |||| ||||    
T  53619537 atgttgtgtttacgagaattggtttt 53619512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 249
Target Start/End: Original strand, 56462131 - 56462287
Alignment:
Q  93 ttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatg 192  Q
    ||||||| ||||||||| || ||||  ||||   || |||||| |||| |||||||| | ||||||||||| ||||||| | |||||| |||||||||||    
T  56462131 ttctgacaatcaacatgtttttataccatttgttttagacacttttggtttcctagcaccagaggttgttgaccttctacatagagttcaaaggatcatg 56462230  T
Q  193 tataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
     || ||||||| ||||| | || || ||| ||||||||||||| ||| |||| ||||    
T  56462231 catgacaatgtcatgtctcctaagtccataaatgttgtgtttacgagaattggtttt 56462287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 4419310 - 4419189
Alignment:
Q  128 ttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgt 227  Q
    |||||||| | |||||| ||||   ||||||||||| ||||||| | |||||| ||||| | ||| |||||||||||||||| | || || ||| |||||    
T  4419310 ttgacactttcggcttcgtagcatcagaggttgttgaccttctacatagagttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgt 4419211  T
Q  228 tgtgtttaggaggattgatttt 249  Q
    |||||||| || ||||| ||||    
T  4419210 tgtgtttacgatgattggtttt 4419189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 249
Target Start/End: Complemental strand, 3330077 - 3329922
Alignment:
Q  94 tctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgt 193  Q
    |||||| ||||||||| || |||| ||||| | ||||||||| |||||||||||||   |||||  |||| ||||||| | |||||  ||||| | |||     
T  3330077 tctgacaatcaacatgcttttatactatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctacatagagtccaaagggttatgc 3329978  T
Q  194 ataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    ||| |||||||||||| | || || ||| |||| |||||||| || ||||| ||||    
T  3329977 atagcaatgttatgtctcctaggtccatgaatgctgtgtttacgatgattggtttt 3329922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 39001445 - 39001323
Alignment:
Q  127 tttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatg 226  Q
    ||||||||| ||||||||||||    |||||  |||| ||||||| | |||||  ||||||| ||| ||||||||||| |||| | || || ||| ||||    
T  39001445 tttgacacttttggcttcctaggatcagaggcagttgaccttctacatagagtccaaaggattatgcataacaatgttgtgtctcctaggtccatgaatg 39001346  T
Q  227 ttgtgtttaggaggattgatttt 249  Q
    ||||||||| |||||||| ||||    
T  39001345 ttgtgtttacgaggattggtttt 39001323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 42455676 - 42455747
Alignment:
Q  137 ttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgt 208  Q
    ||||||||||||  ||||||||||||  ||||||| | |||||| ||| ||||||| |||||||||| ||||    
T  42455676 ttggcttcctagtgctagaggttgttaaccttctacatagagttcaaatgatcatggataacaatgtcatgt 42455747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 600777 - 600859
Alignment:
Q  153 agaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgttta 235  Q
    ||||||||||| ||||||| | |||||| ||| | ||||||||||| |||| ||||| | || || |||||||| ||||||||    
T  600777 agaggttgttgaccttctacatagagttcaaaaggtcatgtataactatgtcatgtctcctaggtccattaatgctgtgttta 600859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 50483211 - 50483321
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || ||||||| |||||||||||| ||||  |||| | || |||||| | || |||||||| | ||||||||||| ||||||| | |||||| |    
T  50483211 agaaagcgtcttctgacaatcaacatgattttataccatttgctttcgacactttcggtttcctagcaccagaggttgttgaccttctacatagagttca 50483310  T
Q  183 aaggatcatgt 193  Q
    || | ||||||    
T  50483311 aaaggtcatgt 50483321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 53170561 - 53170427
Alignment:
Q  127 tttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttat-gttcattaat 225  Q
    ||||||||| | || || ||||| | ||||| ||||| ||||||| | |||||| ||| | ||||| ||| |||||| ||||| | ||| | |||| |||    
T  53170561 tttgacactttcggtttgctagcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctataggtcatgaat 53170462  T
Q  226 gttgtgtttaggaggattgattttacaatctaaaa 260  Q
    |||||||| | ||||||||||||| | ||||||||    
T  53170461 gttgtgttcacgaggattgattttgctatctaaaa 53170427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 23242899 - 23242826
Alignment:
Q  176 gagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    ||||||||||| ||||| |||||||||| || || |||| || ||| ||| ||||||||| || ||||||||||    
T  23242899 gagtttaaagggtcatgcataacaatgtcatttctcttaggtccataaatattgtgtttacgatgattgatttt 23242826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 23255728 - 23255639
Alignment:
Q  160 gttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    |||| ||||||| | |||||  ||||| | ||| |||||||||||||||| | || || ||| ||| ||||||||| |||||||||||||    
T  23255728 gttgaccttctacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatattgtgtttacgaggattgatttt 23255639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 43849383 - 43849484
Alignment:
Q  103 caacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatg 202  Q
    ||||||| || |||| |||||  |||||||||| ||||||||||||  | | ||||||| |  |||||| |||||||| ||| | ||||| |||||||||    
T  43849383 caacatgcttttatactatttgtgtttgacacttttggcttcctagaaccaaaggttgtggatcttctacaaagagttcaaatggtcatgcataacaatg 43849482  T
Q  203 tt 204  Q
    ||    
T  43849483 tt 43849484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 16955491 - 16955387
Alignment:
Q  144 cctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggatt 243  Q
    |||||| | |||||||| || ||||||| | |||||| ||| | ||||| ||| |||||| ||||| | || |  ||| ||||||||||||| |||||||    
T  16955491 cctagcaccagaggttgctgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggcccatgaatgttgtgtttacgaggatt 16955392  T
Q  244 gattt 248  Q
    |||||    
T  16955391 gattt 16955387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 33357 - 33176
Alignment:
Q  68 aagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggcct 167  Q
    |||||||||  ||| |||||| || ||||||| ||||||||| || ||||  |||||| ||||||| | | || |||||| | | ||||||||||| |||    
T  33357 aagtggctaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttacttttgacattttcggtttcctaacaccagaggttgttgacct 33258  T
Q  168 tctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    |||| | |||||| ||| | ||||| ||| |||| ||||||| | || || ||| || || ||||||| |||||||||||||    
T  33257 tctacatagagttcaaaaggtcatgcatagcaattttatgtctcctaggtccatgaacgtcgtgtttacgaggattgatttt 33176  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 249
Target Start/End: Original strand, 41867933 - 41868089
Alignment:
Q  93 ttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatg 192  Q
    ||||||| ||||||||| || ||||  |||| | ||||||||| | || |||||||| | ||||| ||||| ||||||| | |||||| ||| | |||||    
T  41867933 ttctgacaatcaacatgcttttataccatttgcttttgacactttcgggttcctagcaccagaggctgttgaccttctacatagagttcaaaaggtcatg 41868032  T
Q  193 tataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
     |||||||||| ||||| |  | || ||| ||||||||||||| |||||||| ||||    
T  41868033 cataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgaggattggtttt 41868089  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 17344712 - 17344564
Alignment:
Q  101 atcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaa 200  Q
    ||||||||| || ||||  |||| | ||||||||| |  | |||||||| | | ||| ||||| ||||||| | |||||| ||| | ||||| |||||||    
T  17344712 atcaacatgcttttataccatttgcttttgacactttcagtttcctagcaccataggctgttgaccttctacatagagttcaaaaggtcatgcataacaa 17344613  T
Q  201 tgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    ||| ||||| | || || ||| ||||||||||||| |||||||||||||    
T  17344612 tgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttt 17344564  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 28225092 - 28224940
Alignment:
Q  83 agaaagtgttttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagttta 182  Q
    |||||| || ||||||| ||||||||| || ||||  |||| | ||||||||| | |||||||||||   ||||||||||| ||||||| | |||||  |    
T  28225092 agaaagcgtattctgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcttcagaggttgttgaccttctacatagagtcca 28224993  T
Q  183 aaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgttta 235  Q
    |||||| ||| || ||||| ||||||| | || ||  || |||||||||||||    
T  28224992 aaggattatgcatgacaatattatgtctcctaggtcaatgaatgttgtgttta 28224940  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 4413024 - 4413247
Alignment:
Q  26 cttttacggtgggacctgcaactctcaaaactgcgtcaagtcaagtggctattcataagaaagtgttttctgacgatcaacatgattctatattatttac 125  Q
    ||||||| || ||||  ||||| || ||| ||| ||||||  ||||||| |  ||| |||||| || ||||||| ||||||||| || ||||  |||| |    
T  4413024 cttttaccgtaggacaggcaaccctaaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgc 4413123  T
Q  126 gtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaat 225  Q
     ||||||||| | || |||||||| | |||| |||||| ||||||| | || ||| ||| | ||||| ||| ||| || ||||| | || || ||| |||    
T  4413124 ttttgacactttcggtttcctagcaccagagattgttgaccttctacatagggttcaaaaggtcatgcatagcaaagtcatgtctcctaggtccatgaat 4413223  T
Q  226 gttgtgtttaggaggattgatttt 249  Q
    |||||||| | |||||||||||||    
T  4413224 gttgtgttcatgaggattgatttt 4413247  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 233
Target Start/End: Original strand, 9685440 - 9685580
Alignment:
Q  93 ttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatg 192  Q
    ||||||| ||||||||| || ||||  |||| | ||||||||| |||  || ||||| ||||||| ||| | ||||||| | |||||| ||| | |||||    
T  9685440 ttctgacaatcaacatgcttttataccatttgcttttgacacttttgattttctagcactagaggctgtggaccttctatatagagttcaaaaggtcatg 9685539  T
Q  193 tataacaatgttatgtcccttatgttcattaatgttgtgtt 233  Q
     ||| |||||| ||||| | || || ||| |||||||||||    
T  9685540 gatagcaatgtcatgtctcctaggtccatgaatgttgtgtt 9685580  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 13413373 - 13413277
Alignment:
Q  153 agaggttgttggccttctaaaaagagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    ||||| ||||| ||||||| | |||||| ||| | ||||| |||||||||| ||||| | || || ||| ||||||||||||| ||| |||| ||||    
T  13413373 agaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttatgagaattggtttt 13413277  T

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Target: scaffold0031 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 49415 - 49330
Alignment:
Q  175 agagtttaaaggatcatgtataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgattttacaatctaaaa 260  Q
    |||||| ||||||||||| |||||||||| ||||| ||||||| ||| ||||| || |||| ||| ||||||||| | ||||||||    
T  49415 agagttcaaaggatcatgcataacaatgtcatgtctcttatgtccatgaatgtagtatttacgagaattgatttttccatctaaaa 49330  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 249
Target Start/End: Complemental strand, 103187 - 103032
Alignment:
Q  94 tctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgt 193  Q
    |||||| ||||||||| || ||||  |||| | ||||||||| | || |||||||| | ||||| ||||| ||||||| |  ||| | ||| | |||||     
T  103187 tctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggctgttgaccttctacatcgagctcaaaaggtcatgc 103088  T
Q  194 ataacaatgttatgtcccttatgttcattaatgttgtgtttaggaggattgatttt 249  Q
    ||||||||||  |||| | || || ||| ||||||||||||| |||||||| ||||    
T  103087 ataacaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggtttt 103032  T

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Target: scaffold0186 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 10434 - 10333
Alignment:
Q  101 atcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgttggccttctaaaaagagtttaaaggatcatgtataacaa 200  Q
    ||||||||| || ||||  |||| | |||||||||  |||||||||||| | ||||||||||| |||||| || |||||| |||||  |||| |||||||    
T  10434 atcaacatgcttttataccatttgcttttgacacttgtggcttcctagcaccagaggttgttgaccttct-aatagagttgaaagggccatgcataacaa 10336  T
Q  201 tgt 203  Q
    |||    
T  10335 tgt 10333  T

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Target: scaffold0493 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 8541 - 8609
Alignment:
Q  93 ttctgacgatcaacatgattctatattatttacgtttgacactcttggcttcctagccctagaggttgt 161  Q
    ||||||| ||||||||| || ||||  |||| ||||| ||||| |||| |||||||| |||||||||||    
T  8541 ttctgacaatcaacatgtttttataccatttgcgtttaacacttttggtttcctagcactagaggttgt 8609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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