View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_11 (Length: 389)
Name: NF10038_low_11
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 16381613 - 16381246
Alignment:
| Q |
10 |
gcagagagagaggggatcaccattgcttggaagtttacaaaggcatggggttgaaaatgggtggaaaagtgttagtcatgattcagcatcagcagtgtgg |
109 |
Q |
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| T |
16381613 |
gcagagagagaggggatcaccattgcttggaagtttacaaaggcatggggttgaaaatgggtggaaaagtgttagtcatgattcagcatcagcagtgtgg |
16381514 |
T |
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| Q |
110 |
caaagaccaatattgagaggggagaaatgtgagcttccaagttttagtggactcattctctatgatgaaaaaggaagattgcttaatgattctgtgaatg |
209 |
Q |
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| T |
16381513 |
caaagaccaatattgagaggggagaaatgtgagcttccaagttttagtggactcattctctatgatgaaaaaggaagattgcttaatgattctgtgaatg |
16381414 |
T |
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| Q |
210 |
agatacaacaatgcatggaaatttctgaacaggtaatcaattttttccttcattaaatccattattgtagatagtataatgtatatttgttcctacaaat |
309 |
Q |
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| T |
16381413 |
agatacaacaatgcatggaaatttctgaacaggtaatcaattttttccttcattaaatccattattgtagatagtataatgtatatttgttcctacaaat |
16381314 |
T |
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| Q |
310 |
accatttgatggcgtacttattcataagtgaagtgcatgatataactattaatgtaagacaattgtga |
377 |
Q |
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| T |
16381313 |
accatttgatggcgtacttattcataagtaaagtgcatgatataactattaatgtaagacaattgtga |
16381246 |
T |
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