View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10038_low_13 (Length: 381)

Name: NF10038_low_13
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10038_low_13
NF10038_low_13
[»] chr3 (2 HSPs)
chr3 (20-346)||(31820391-31820717)
chr3 (343-377)||(31820740-31820774)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 31820391 - 31820717
Alignment:
Q  20 agtataaactttatatccataaattttatattgaatattgaccaaattttaggtggggagtggacttaacgacccaatgaaatactccccctccactaag 119  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  31820391 agtataaacttttaatccataaattttatattgaatattgaccaaattttaggtggggaggggacttaatgacccaatgaaatactccccctccactaag 31820490  T
Q  120 tagctaactccctctccactcaactacaaaaaagaagaaaattctctcaccaccatccatcaataatcaataatnnnnnnncattccaatataacttttc 219  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  31820491 tagctgattccctctccactcaactacaaaaaagaagaaaattctctcaccaccatccatcaataatcaataataaaaaaacattccaatataacttttc 31820590  T
Q  220 acactctcgaatatcacttgagatatacatatccggaaaaaataagaagcttatattttctagaatttcataagtatgtgatttttcacaaattttggat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31820591 acactctcgaatatcacttgagatatacatatccggaaaaaataagaagcttatattttctagaatttcataagtatgtgatttttcacaaattttggat 31820690  T
Q  320 gcaacctgaaactgagagacaagaact 346  Q
    ||||||||||||||| |||||||||||    
T  31820691 gcaacctgaaactgaaagacaagaact 31820717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 31820740 - 31820774
Alignment:
Q  343 aactccacaacatcatgcaccctttcatctcactc 377  Q
    ||||||||||||||||||||||||||| |||||||    
T  31820740 aactccacaacatcatgcaccctttcaactcactc 31820774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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