View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_14 (Length: 376)
Name: NF10038_low_14
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 67 - 366
Target Start/End: Original strand, 4670064 - 4670355
Alignment:
| Q |
67 |
caaaccttcacaagcaacattcaaggtttgaagatcaacttgccgaccattgagaccatagtccacaaaacacttttgtcacaaaa-aacaaggtttagg |
165 |
Q |
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| T |
4670064 |
caaaccttcacaagccacattcaaggtttgaagatcaacttgccgaccat---------agtccacaaaacacttttgtcacaaaaaaacaaggtttagg |
4670154 |
T |
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| Q |
166 |
ttcatagttcttatcaacactacagttttgtcgatctttgtcgtagacgcatcgttagtacgactctatcatctatgtataggaaggaggaagacacaag |
265 |
Q |
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| T |
4670155 |
ttcataattcttatcaacactacagttttgtcgatctttgtcgtagacgcatcgttagtacgactctatcatctatgcataggaaggaggaagacacaag |
4670254 |
T |
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| Q |
266 |
tctcatttagatcaaataaaaggctgctaagctacctctcccctgtggctagcattgctctaaacacgaacaaaatgggccttaaacatgttaatcaaca |
365 |
Q |
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| T |
4670255 |
tctcatttagatcaaataaaaggctgctaagctacttctcccctgtggctagcattgctctgaacacgaacaaaatgggccttaaacatgttaatcaaca |
4670354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 4670688 - 4671010
Alignment:
| Q |
9 |
tttatccctacacgaccaacaatcgtctttgcaaggtaagcttccatgcacatacgcgcaaaccttcacaagcaacattcaaggtttgaagatcaactt- |
107 |
Q |
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|||| ||||||||||||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4670688 |
tttaaccctacacgaccaacaatcgtctgtg--aggtaagcttccatgcacatatgtgcaaaccttcacaagcaaccttcaaggtttgaagatcaacttt |
4670785 |
T |
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| Q |
108 |
---------gccgaccattgagaccatagtccacaaaacacttttgtcacaaaa-aacaaggtttaggttcatagttcttatcaacactacagttttgtc |
197 |
Q |
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| T |
4670786 |
aaaatggttgtcgacctttgagactgaagtccaaaaaacacttttgtcataaaaaaacaaggtttaggttcataactcttatccacaccacagttttgtc |
4670885 |
T |
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| Q |
198 |
gatctttgtcgtagacgcatcgttagtacgactctatcatctatgtataggaaggaggaagacacaagtctcatttagatcaaataaaaggctgctaagc |
297 |
Q |
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|||||||||||||||||| | |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4670886 |
gatctttgtcgtagacgcgttgttagtaccactctatcatctatgcataggatggaggaagacacaagtctcatttagatcaaataaaaggcagctaagc |
4670985 |
T |
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| Q |
298 |
tacctctcccctgtggctagcattg |
322 |
Q |
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| T |
4670986 |
tacctcttccctgtggctagcattg |
4671010 |
T |
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