View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10038_low_16 (Length: 337)

Name: NF10038_low_16
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10038_low_16
NF10038_low_16
[»] chr8 (7 HSPs)
chr8 (19-298)||(4845384-4845663)
chr8 (49-144)||(4800246-4800342)
chr8 (306-337)||(36497661-36497692)
chr8 (19-52)||(4800398-4800431)
chr8 (307-336)||(43341389-43341418)
chr8 (309-337)||(2952698-2952726)
chr8 (309-337)||(11138910-11138938)
[»] scaffold0662 (1 HSPs)
scaffold0662 (306-337)||(1078-1109)
[»] scaffold0154 (1 HSPs)
scaffold0154 (306-337)||(19731-19762)
[»] chr7 (2 HSPs)
chr7 (306-337)||(37832450-37832481)
chr7 (309-337)||(23680067-23680095)
[»] chr6 (2 HSPs)
chr6 (306-337)||(27334858-27334889)
chr6 (306-337)||(27395598-27395629)
[»] chr5 (3 HSPs)
chr5 (306-337)||(14508197-14508228)
chr5 (306-336)||(14070656-14070686)
chr5 (309-337)||(4098626-4098654)
[»] chr4 (9 HSPs)
chr4 (306-337)||(940299-940330)
chr4 (306-337)||(33093144-33093175)
chr4 (306-337)||(35017153-35017184)
chr4 (306-337)||(47014939-47014970)
chr4 (306-334)||(6290462-6290490)
chr4 (306-334)||(40629383-40629411)
chr4 (306-334)||(42815404-42815432)
chr4 (306-334)||(53662471-53662499)
chr4 (306-334)||(53781879-53781907)
[»] chr3 (4 HSPs)
chr3 (306-337)||(7867751-7867782)
chr3 (306-337)||(45205288-45205319)
chr3 (306-336)||(1295332-1295362)
chr3 (306-334)||(884534-884562)
[»] chr1 (5 HSPs)
chr1 (306-337)||(18610773-18610804)
chr1 (307-337)||(9882699-9882729)
chr1 (306-336)||(26585214-26585244)
chr1 (309-337)||(30198009-30198037)
chr1 (306-334)||(46281436-46281464)
[»] chr2 (4 HSPs)
chr2 (306-336)||(3091741-3091771)
chr2 (306-336)||(7428433-7428463)
chr2 (306-336)||(10288150-10288180)
chr2 (306-336)||(14891119-14891149)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 4845663 - 4845384
Alignment:
Q  19 tgatgcttattaaatcactactttccttctaaacaaaaattatgtatgcttttatgttactaattatgtgttgaagccatgcttaaatatgattttgttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4845663 tgatgcttattaaatcactactttccttctaaacaaaaattatgtatgcatttatgttactaattatgtgttgaagccatccttaaatatgattttgttt 4845564  T
Q  119 ctttgaagctaaatgcatcacacagtggaagaggcacaacaaataccttatcttgagaacttttcgctccaacatatgatccatgtttcaaaaaatggtg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4845563 ctttgaagctaaatgcatcacacagtggaagaggcacaacaaataccttatcttgagaacttttcgctccaacgtatgatccatgtttcaaaaaatggtg 4845464  T
Q  219 tatagagtttagagggagacctccctgaatccgtaaccaagctggtactccatgccatatactataataaaaagagcact 298  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  4845463 tatagagtttagagggagagctccctgaatccgcaaccaagctgctactccatgccatatactataataaaaagagcact 4845384  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 4800342 - 4800246
Alignment:
Q  49 aaacaaaaattatgtatgcttttatgttactaattatgtgttgaagcca-tgcttaaatatgattttgtttctttgaagctaaatgcatcacacagt 144  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||||| |||||||||||||| |||| | ||||||| || |||||    
T  4800342 aaacaaaaattatgtatgcatttattttactaattatgtgttgaagccattccttaaagatgattttgtttctatgaatccaaatgcaccaaacagt 4800246  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 36497661 - 36497692
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  36497661 gagaaatgatatttgtacaactattttgtgac 36497692  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 4800431 - 4800398
Alignment:
Q  19 tgatgcttattaaatcactactttccttctaaac 52  Q
    ||||||||||||||||||||||||||| ||||||    
T  4800431 tgatgcttattaaatcactactttcctcctaaac 4800398  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 43341389 - 43341418
Alignment:
Q  307 agaaatgatatttgtacaactattttgtga 336  Q
    ||||||||||||||||||||||||||||||    
T  43341389 agaaatgatatttgtacaactattttgtga 43341418  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 2952726 - 2952698
Alignment:
Q  309 aaatgatatttgtacaactattttgtgac 337  Q
    |||||||||||||||||||||||||||||    
T  2952726 aaatgatatttgtacaactattttgtgac 2952698  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 11138910 - 11138938
Alignment:
Q  309 aaatgatatttgtacaactattttgtgac 337  Q
    |||||||||||||||||||||||||||||    
T  11138910 aaatgatatttgtacaactattttgtgac 11138938  T

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Target: scaffold0662 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 1078 - 1109
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  1078 gagaaatgatatttgtacaactattttgtgac 1109  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Complemental strand, 19762 - 19731
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  19762 gagaaatgatatttgtacaactattttgtgac 19731  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 37832450 - 37832481
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  37832450 gagaaatgatatttgtacaactattttgtgac 37832481  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 23680095 - 23680067
Alignment:
Q  309 aaatgatatttgtacaactattttgtgac 337  Q
    |||||||||||||||||||||||||||||    
T  23680095 aaatgatatttgtacaactattttgtgac 23680067  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 27334858 - 27334889
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  27334858 gagaaatgatatttgtacaactattttgtgac 27334889  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 27395598 - 27395629
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  27395598 gagaaatgatatttgtacaactattttgtgac 27395629  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Complemental strand, 14508228 - 14508197
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  14508228 gagaaatgatatttgtacaactattttgtgac 14508197  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Complemental strand, 14070686 - 14070656
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtga 336  Q
    |||||||||||||||||||||||||||||||    
T  14070686 gagaaatgatatttgtacaactattttgtga 14070656  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 4098626 - 4098654
Alignment:
Q  309 aaatgatatttgtacaactattttgtgac 337  Q
    |||||||||||||||||||||||||||||    
T  4098626 aaatgatatttgtacaactattttgtgac 4098654  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Complemental strand, 940330 - 940299
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  940330 gagaaatgatatttgtacaactattttgtgac 940299  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Complemental strand, 33093175 - 33093144
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  33093175 gagaaatgatatttgtacaactattttgtgac 33093144  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 35017153 - 35017184
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  35017153 gagaaatgatatttgtacaactattttgtgac 35017184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 47014939 - 47014970
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  47014939 gagaaatgatatttgtacaactattttgtgac 47014970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 6290462 - 6290490
Alignment:
Q  306 gagaaatgatatttgtacaactattttgt 334  Q
    |||||||||||||||||||||||||||||    
T  6290462 gagaaatgatatttgtacaactattttgt 6290490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Complemental strand, 40629411 - 40629383
Alignment:
Q  306 gagaaatgatatttgtacaactattttgt 334  Q
    |||||||||||||||||||||||||||||    
T  40629411 gagaaatgatatttgtacaactattttgt 40629383  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 42815404 - 42815432
Alignment:
Q  306 gagaaatgatatttgtacaactattttgt 334  Q
    |||||||||||||||||||||||||||||    
T  42815404 gagaaatgatatttgtacaactattttgt 42815432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Complemental strand, 53662499 - 53662471
Alignment:
Q  306 gagaaatgatatttgtacaactattttgt 334  Q
    |||||||||||||||||||||||||||||    
T  53662499 gagaaatgatatttgtacaactattttgt 53662471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Complemental strand, 53781907 - 53781879
Alignment:
Q  306 gagaaatgatatttgtacaactattttgt 334  Q
    |||||||||||||||||||||||||||||    
T  53781907 gagaaatgatatttgtacaactattttgt 53781879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Complemental strand, 7867782 - 7867751
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  7867782 gagaaatgatatttgtacaactattttgtgac 7867751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 45205288 - 45205319
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  45205288 gagaaatgatatttgtacaactattttgtgac 45205319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Original strand, 1295332 - 1295362
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtga 336  Q
    |||||||||||||||||||||||||||||||    
T  1295332 gagaaatgatatttgtacaactattttgtga 1295362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 884534 - 884562
Alignment:
Q  306 gagaaatgatatttgtacaactattttgt 334  Q
    |||||||||||||||||||||||||||||    
T  884534 gagaaatgatatttgtacaactattttgt 884562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 18610773 - 18610804
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtgac 337  Q
    ||||||||||||||||||||||||||||||||    
T  18610773 gagaaatgatatttgtacaactattttgtgac 18610804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 337
Target Start/End: Complemental strand, 9882729 - 9882699
Alignment:
Q  307 agaaatgatatttgtacaactattttgtgac 337  Q
    |||||||||||||||||||||||||||||||    
T  9882729 agaaatgatatttgtacaactattttgtgac 9882699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Complemental strand, 26585244 - 26585214
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtga 336  Q
    |||||||||||||||||||||||||||||||    
T  26585244 gagaaatgatatttgtacaactattttgtga 26585214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 30198009 - 30198037
Alignment:
Q  309 aaatgatatttgtacaactattttgtgac 337  Q
    |||||||||||||||||||||||||||||    
T  30198009 aaatgatatttgtacaactattttgtgac 30198037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 46281436 - 46281464
Alignment:
Q  306 gagaaatgatatttgtacaactattttgt 334  Q
    |||||||||||||||||||||||||||||    
T  46281436 gagaaatgatatttgtacaactattttgt 46281464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Original strand, 3091741 - 3091771
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtga 336  Q
    |||||||||||||||||||||||||||||||    
T  3091741 gagaaatgatatttgtacaactattttgtga 3091771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Original strand, 7428433 - 7428463
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtga 336  Q
    |||||||||||||||||||||||||||||||    
T  7428433 gagaaatgatatttgtacaactattttgtga 7428463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Original strand, 10288150 - 10288180
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtga 336  Q
    |||||||||||||||||||||||||||||||    
T  10288150 gagaaatgatatttgtacaactattttgtga 10288180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Complemental strand, 14891149 - 14891119
Alignment:
Q  306 gagaaatgatatttgtacaactattttgtga 336  Q
    |||||||||||||||||||||||||||||||    
T  14891149 gagaaatgatatttgtacaactattttgtga 14891119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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