View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10038_low_18 (Length: 315)
Name: NF10038_low_18
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 11774781 - 11774482
Alignment:
| Q |
1 |
gtgaatcaaattcgaagttaaaggtttctcttataattactatcaacggagcacaa-tgtatatgtttggtttttagctgaaaattaattgagnnnnnnn |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||| || |
|
|
| T |
11774781 |
gtgaatcaaattcgaagttaaaggtttctcttacaattactatcaatggagcacaaatgtatatgtttggtttt-acctgaaaattaatttagttttttt |
11774683 |
T |
|
| Q |
100 |
---ggtggtgtccttgttttggtgctttatttgtaacatgttgacttatgtatctcttccatcttagcactcatggttattgtattatttttcttataac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11774682 |
tttggtggtgtccttgttttggtgctttatttgtaacatgttgacttatgtatctcttccatcttagcactcatggttattgtattattattcttataac |
11774583 |
T |
|
| Q |
197 |
gagaaatttggaactcagttggtacgatttcaacaattagtcttgtagggaaaaggattaggaactatgaatcccaagtggacaatttgagggaagaaga |
296 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11774582 |
gagaaatttgaaactcagttggtacgatttcaagaattagacttgtagggaaaaggattaggaactatgaatcccaagtggacaatttgagggaagaaga |
11774483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University