View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_20 (Length: 300)
Name: NF10038_low_20
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 8870108 - 8870368
Alignment:
| Q |
20 |
cataaaactactacaacccagtttcgacacctgattcgaatcaaaatagcagtccaattactatgatttgaatcaacgcctctagaagctaaaagaacaa |
119 |
Q |
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| T |
8870108 |
cataaaactactagaacccagtttcgacacctgattcgaatcaaaatagcactccaattactatgatttgaatcaacgcctctagaagctaaaaaaacaa |
8870207 |
T |
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| Q |
120 |
tggattttaagcacaactgttctccaacatgactccaaatcaatagtgatgtcaatttaattatcaaccatattgttaatatctccatcctcaagttact |
219 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8870208 |
tggattttaagcacaactgttctcgaacatgactccaaatcaatagtgatgtcaatttaattatcaaccatattgttaatatctccatcctcaagttact |
8870307 |
T |
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| Q |
220 |
tttcaaaataattgatcaagtttaagtctctcttaaaccttgatccagtcactgacctcca |
280 |
Q |
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| T |
8870308 |
tttcaaaataattgatcaagtttaagtctctcttaaaccttgatccagtcactgacctcca |
8870368 |
T |
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