View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_25 (Length: 263)
Name: NF10038_low_25
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 24300261 - 24300018
Alignment:
| Q |
9 |
agcagagacaacaacatgcacaacagctcctcctcgaaatgacatggtttgcgcccaacaaaatgaaatcccataccggattacaccaggaatgaaaccc |
108 |
Q |
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| T |
24300261 |
agcagagacaacaatatgcacaacagctcctcctcgaaatgacatggtttgcgcccaacaaaatgaaatcccatac-ggattacaccaggaatgaaaccc |
24300163 |
T |
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| Q |
109 |
taatgcggtgcataaaattttctcccatcatcttcctgatccaaactctaatgcgaatgcaccgcccctg---nnnnnnnnnncactgcatccaaagctc |
205 |
Q |
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| T |
24300162 |
taatgcggtgcataaaattttctcccatcgtcttcctgatccaaactctaatgcgaatgcaccgcccctggaaaaaaaaaaaccactacatccaaagctc |
24300063 |
T |
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| Q |
206 |
caacacaagcaaccagaccgcacgcaaacgaggtggctgatactg |
250 |
Q |
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| T |
24300062 |
taacacaagcaaccagaccgcacgcaaatgaggtggctgatactg |
24300018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 3701240 - 3701153
Alignment:
| Q |
10 |
gcagagacaacaacatgcacaacagctcctcctcgaaatgacatggtttgcgcccaacaaaatgaaatcccataccggattacaccag |
97 |
Q |
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| T |
3701240 |
gcagaggcaacaacatgtacaacagcttctgctcgaaataacatggtttgcgccgaacaaaatgaaatcttataccggattagaccag |
3701153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 3685753 - 3685661
Alignment:
| Q |
10 |
gcagagacaacaacatg-----cacaacagctcctcctcgaaatgacatggtttgcgcccaacaaaatgaaatcccataccggattacaccag |
97 |
Q |
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| T |
3685753 |
gcagagacaacaacatgtacaacacaacatctcctgctcgaaataacatggtttgcgccgaataaactaaaatctcataccgaattacaccag |
3685661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 3693478 - 3693402
Alignment:
| Q |
21 |
aacatgcacaacagctcctcctcgaaatgacatggtttgcgcccaacaaaatgaaatcccataccggattacaccag |
97 |
Q |
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|||||| ||| || ||||| ||| |||| | |||||||||| | |||||||||||||||||||||| |||||||||| |
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| T |
3693478 |
aacatgtacatcacctcctgctcaaaataatatggtttgcgtcgaacaaaatgaaatcccataccgaattacaccag |
3693402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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