View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_26 (Length: 260)
Name: NF10038_low_26
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 20982214 - 20981960
Alignment:
| Q |
1 |
ttttaaaggtgtttgtagtttgttatttgacctacgttgctagcttttgggatgagatcgaagcacatttaacagtttcaaccttttatgattactaggt |
100 |
Q |
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| T |
20982214 |
ttttaaaattgtttgtagtttgttatttgacctacgttgctagcttttgggatgagatcgaagcacatttaacagtttcaaccttttatgattactaggt |
20982115 |
T |
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| Q |
101 |
atatatccaaatgtctaattcagcggatgagataacgattccgccgcagctgacgaagaaagttaagctcagcagcgagtgtgaaaatgaagatagactc |
200 |
Q |
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| T |
20982114 |
atatatccaaatgtctaattcagcggatgagataacgattccgccgcagctgacgaagaaagttaagctcagcagcgagtgtgaaaatgaagatagactc |
20982015 |
T |
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| Q |
201 |
agtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaaac |
255 |
Q |
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| T |
20982014 |
agtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaaac |
20981960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 39 - 254
Target Start/End: Complemental strand, 20995330 - 20995120
Alignment:
| Q |
39 |
gctagcttttgggatgagatcgaagcacatttaacagtttcaaccttttatgattactaggtatatatccaaatgtctaattcagcggatgagataacga |
138 |
Q |
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| T |
20995330 |
gctaacttttggcatgaaatccaagcacatttaacggtttcaacctttttc---tactaggtatat--ccaaatgtctaattcagaggatgagatcatga |
20995236 |
T |
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| Q |
139 |
ttccgccgcagctgacgaagaaagttaagctcagcagcgagtgtgaaaatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctc |
238 |
Q |
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| T |
20995235 |
ttccgccgccgccgacgaagaaagttaagctcagcagcgagtgtgaaaatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctc |
20995136 |
T |
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| Q |
239 |
ctttctgaacaccaaa |
254 |
Q |
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| T |
20995135 |
ctttctgaacaccaaa |
20995120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 20948576 - 20948699
Alignment:
| Q |
116 |
taattcagcggatgagataacgattccgccgcagctgacgaagaaagttaagctcagcagcgagtgtgaaaatgaagatagactcagtgacttgcccgaa |
215 |
Q |
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|||||||| || |||||||||||||| |||| | |||||||||| ||||||||||| || || ||||| |||||||||| ||||| || |||||| |
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| T |
20948576 |
taattcagatgacgagataacgattccaccgccaccgacgaagaaaattaagctcagc---gattgcgaaaacgaagatagaccgagtgatttacccgaa |
20948672 |
T |
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| Q |
216 |
agtgttatccttcacattctctccttt |
242 |
Q |
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| T |
20948673 |
agcgttatcctttacattctctccttt |
20948699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 38142268 - 38142201
Alignment:
| Q |
181 |
gtgaaaatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctcctttctgaac |
248 |
Q |
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| T |
38142268 |
gtgaaaatgaagacagactcagcgacttacctgactgtgttatccttcacatactctcctttttgaac |
38142201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 7976909 - 7976851
Alignment:
| Q |
198 |
ctcagtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaaact |
256 |
Q |
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| T |
7976909 |
ctcagcgacttacccgaatgcattatccttcacattctctcctttttgaacgccaaact |
7976851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 3978048 - 3978128
Alignment:
| Q |
173 |
cagcgagtgtgaaaatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaa |
253 |
Q |
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| T |
3978048 |
cagcgagagcgaaaatgaagacagactcagcgacttacctgaaagcattattcttcacatactctcgtttttaaacaccaa |
3978128 |
T |
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