View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_29 (Length: 252)
Name: NF10038_low_29
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 41031499 - 41031258
Alignment:
| Q |
6 |
atcacttacatttaactcactattaactagaatcagtcatacaaaatgcattcaaatccacttttgtcaccaatgaacaaaagagacacaaaatcaggat |
105 |
Q |
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| T |
41031499 |
atcacttacatttaactcactattaactagaatcagtcacacaaaatgcattcaaatccacttttgtcaccaatgaacaaaacagacacaaaatcaggat |
41031400 |
T |
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| Q |
106 |
aaaacttgtcatagaacttgaacatgcgatacatcatacaggtaataaaatagcagaaacttctatggttgcaactgctagagaaataatgtcacaccag |
205 |
Q |
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| T |
41031399 |
aaaacttgtcatagaactagaacatgtgatacatcatacaggtaataaaatagcagaaacttctatggttgcaactgctagagaaataatgtcacaccag |
41031300 |
T |
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| Q |
206 |
tattatatattcttagccggcttgtacaacagaaactccaaa |
247 |
Q |
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| T |
41031299 |
tattatatattcttagccggcttgtacaacagaaactccaaa |
41031258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 41036958 - 41036882
Alignment:
| Q |
67 |
ttttgtcaccaatgaacaaaagagacacaaaatcaggataaaacttgtcatagaacttgaacatgcgatacatcata |
143 |
Q |
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||||||||| | |||||||| | ||||||||||| |||||||||||||| |||| |||||||| |||| |||||| |
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| T |
41036958 |
ttttgtcacggaagaacaaaatacacacaaaatcatgataaaacttgtcaaggaacatgaacatgtgatatatcata |
41036882 |
T |
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