View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10038_low_31 (Length: 249)

Name: NF10038_low_31
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10038_low_31
NF10038_low_31
[»] chr5 (3 HSPs)
chr5 (1-127)||(17793450-17793576)
chr5 (122-240)||(17794438-17794556)
chr5 (4-127)||(20334082-20334205)
[»] chr6 (3 HSPs)
chr6 (1-127)||(7034030-7034156)
chr6 (122-240)||(7035018-7035136)
chr6 (4-127)||(26254080-26254203)
[»] chr4 (5 HSPs)
chr4 (1-127)||(1541328-1541454)
chr4 (122-240)||(1542316-1542434)
chr4 (4-127)||(25428581-25428704)
chr4 (25-127)||(16937895-16937997)
chr4 (60-127)||(15537583-15537650)
[»] chr1 (3 HSPs)
chr1 (1-127)||(26400961-26401087)
chr1 (122-240)||(26401949-26402067)
chr1 (15-127)||(49211151-49211263)
[»] chr8 (2 HSPs)
chr8 (4-127)||(43441713-43441836)
chr8 (4-127)||(18011255-18011378)
[»] chr7 (4 HSPs)
chr7 (4-127)||(8986047-8986170)
chr7 (4-127)||(35973037-35973160)
chr7 (4-127)||(35994449-35994572)
chr7 (25-127)||(43582949-43583051)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 17793450 - 17793576
Alignment:
Q  1 acatttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17793450 acatttgggctgtcaaaatggaagcttacctagaagctttggacgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaac 17793549  T
Q  101 tatggctcaattgaagtttcacaagga 127  Q
    |||||||||||||||||||||||||||    
T  17793550 tatggctcaattgaagtttcacaagga 17793576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 17794438 - 17794556
Alignment:
Q  122 caaggaattaaggagttcaaagacctcaaaagtcagaattggcaatggacaaaatatttctgtaaagggaaaaggcaccattgcaattgtaagttgttcg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17794438 caaggaattaaggagttcaaagacctcaaaagtcagaattggcaatggacagaatatttctgtaaagggaaaaggcaccattgcaattgtaagttgttcg 17794537  T
Q  222 ggtacaaaacttatctctg 240  Q
    |||||||||||||||||||    
T  17794538 ggtacaaaacttatctctg 17794556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 20334205 - 20334082
Alignment:
Q  4 tttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactat 103  Q
    ||||||| || ||||| || |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  20334205 tttgggcagtaaaaattgaggcttacctagaagctttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaactat 20334106  T
Q  104 ggctcaattgaagtttcacaagga 127  Q
    |||||| ||||| | |||||||||    
T  20334105 ggctcagttgaaatatcacaagga 20334082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 7034030 - 7034156
Alignment:
Q  1 acatttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaac 100  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7034030 acatttgggctgtcaaaatggaggcttacctagaagctttggacgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaac 7034129  T
Q  101 tatggctcaattgaagtttcacaagga 127  Q
    ||||||||| |||||||||||||||||    
T  7034130 tatggctcagttgaagtttcacaagga 7034156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 7035018 - 7035136
Alignment:
Q  122 caaggaattaaggagttcaaagacctcaaaagtcagaattggcaatggacaaaatatttctgtaaagggaaaaggcaccattgcaattgtaagttgttcg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  7035018 caaggaattaaggagttcaaagacctcaaaagtcagaattggcaatggacaaaatattgctgtaaagagaaaaggcaccattgcaattgtaagttgttcg 7035117  T
Q  222 ggtacaaaacttatctctg 240  Q
    |||||||||||||||||||    
T  7035118 ggtacaaaacttatctctg 7035136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 26254080 - 26254203
Alignment:
Q  4 tttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactat 103  Q
    ||||||| || | ||||||  |||||||||| |||||||  |||||||| ||| | ||||||||||||||||||| ||||||||| |||||||| || ||    
T  26254080 tttgggcagtaagaatggagtcttacctagaggctttggatgtttgggaggccgttgaagaggattatgaagttcttccgctgccgaataatcctaccat 26254179  T
Q  104 ggctcaattgaagtttcacaagga 127  Q
    ||||||||| || | |||||||||    
T  26254180 ggctcaattaaaatatcacaagga 26254203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 1541328 - 1541454
Alignment:
Q  1 acatttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaac 100  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1541328 acatttgggctgtcaaaatggaggcttacctagaagctttggacgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaac 1541427  T
Q  101 tatggctcaattgaagtttcacaagga 127  Q
    ||||||||| |||||||||||||||||    
T  1541428 tatggctcagttgaagtttcacaagga 1541454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 1542316 - 1542434
Alignment:
Q  122 caaggaattaaggagttcaaagacctcaaaagtcagaattggcaatggacaaaatatttctgtaaagggaaaaggcaccattgcaattgtaagttgttcg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1542316 caaggaattaaggagttcaaagacctcaaaagtcagaattggcaatggacaaaatattgctgtaaagggaaaaggcaccattgcaattgtaagttgttcg 1542415  T
Q  222 ggtacaaaacttatctctg 240  Q
    |||||||||||||||||||    
T  1542416 ggtacaaaacttatctctg 1542434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 25428581 - 25428704
Alignment:
Q  4 tttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactat 103  Q
    ||||||| || |||||||| |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  25428581 tttgggcagtaaaaatggaggcttacctagaagctttggaagtttgggaagccatagaagaagattatgaagttcctccactgccgaataatccaactat 25428680  T
Q  104 ggctcaattgaagtttcacaagga 127  Q
    | |||| ||||| | |||||||||    
T  25428681 gactcagttgaaatatcacaagga 25428704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 16937895 - 16937997
Alignment:
Q  25 cttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactatggctcaattgaagtttcacaa 124  Q
    |||||||||| |||||||  |||||||| ||||| |||||||||||| | |||||||||||||| |||||||| || |||||||| || || | ||||||    
T  16937895 cttacctagaggctttggatgtttgggaggccattgaagaggattataatgttcctccgctgccgaataatcctaccatggctcagttaaaatatcacaa 16937994  T
Q  125 gga 127  Q
    |||    
T  16937995 gga 16937997  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 15537583 - 15537650
Alignment:
Q  60 gaagaggattatgaagttcctccgctgccaaataatccaactatggctcaattgaagtttcacaagga 127  Q
    ||||||||||||||||||||||||||||  |||||||| || |||||||| || || | |||||||||    
T  15537583 gaagaggattatgaagttcctccgctgcagaataatcctaccatggctcagttaaaatatcacaagga 15537650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 26400961 - 26401087
Alignment:
Q  1 acatttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaac 100  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26400961 acatttgggctgtcaaaatggaggcttacctagaagctttggacgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaac 26401060  T
Q  101 tatggctcaattgaagtttcacaagga 127  Q
    ||||||||| |||||||||||||||||    
T  26401061 tatggctcagttgaagtttcacaagga 26401087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 26401949 - 26402067
Alignment:
Q  122 caaggaattaaggagttcaaagacctcaaaagtcagaattggcaatggacaaaatatttctgtaaagggaaaaggcaccattgcaattgtaagttgttcg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26401949 caaggaattaaggagttcaaagacctcaaaagtcagaattggcaatggacaaaatattgctgtaaagggaaaaggcaccattgcaattgtaagttgttcg 26402048  T
Q  222 ggtacaaaacttatctctg 240  Q
    |||||||||||||||||||    
T  26402049 ggtacaaaacttatctctg 26402067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 49211151 - 49211263
Alignment:
Q  15 aaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactatggctcaattga 114  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| ||||    
T  49211151 aaaatggaggcttacctagaagctttggaagtttgggaagccatagaagaggattataaagttcctccactgccgaataatccaactatggctcagttga 49211250  T
Q  115 agtttcacaagga 127  Q
    | | |||||||||    
T  49211251 aatatcacaagga 49211263  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 43441713 - 43441836
Alignment:
Q  4 tttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactat 103  Q
    ||||||| || | ||||||  |||||||||| |||||||  |||||||| ||| | |||||||||| |||||||| ||||||||| |||||||| || ||    
T  43441713 tttgggcagtaagaatggagtcttacctagaggctttggatgtttgggaggccgttgaagaggattttgaagttcttccgctgccgaataatcctaccat 43441812  T
Q  104 ggctcaattgaagtttcacaagga 127  Q
    ||||||||| || | |||||||||    
T  43441813 ggctcaattaaaatatcacaagga 43441836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 18011255 - 18011378
Alignment:
Q  4 tttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactat 103  Q
    ||||||| || | ||||||  ||||||| || |||||||  |||||||| ||  | ||||||||||||||||||||||||||||  |||||||| || ||    
T  18011255 tttgggcagtaagaatggagtcttacctggaggctttggatgtttgggaggctgttgaagaggattatgaagttcctccgctgcagaataatcctaccat 18011354  T
Q  104 ggctcaattgaagtttcacaagga 127  Q
    |||||| || || | |||||||||    
T  18011355 ggctcagttaaaatatcacaagga 18011378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 8986047 - 8986170
Alignment:
Q  4 tttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactat 103  Q
    ||||||| || | ||||||  |||||||||| |||||||  |||||||| ||| | ||||| ||||||||||||| ||||||||| |||||||| || ||    
T  8986047 tttgggcagtaagaatggagtcttacctagaggctttggatgtttgggaggccgttgaagatgattatgaagttcttccgctgccgaataatcctaccat 8986146  T
Q  104 ggctcaattgaagtttcacaagga 127  Q
    ||||||||| || | |||||||||    
T  8986147 ggctcaattaaaatatcacaagga 8986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 35973160 - 35973037
Alignment:
Q  4 tttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactat 103  Q
    ||||||| || | ||||||  |||||||||| |||||||  |||||||| ||| | |||||||||| |||||||| ||||||||| |||||||| || ||    
T  35973160 tttgggcagtaagaatggagtcttacctagaggctttggatgtttgggaggccgttgaagaggattgtgaagttcttccgctgccgaataatcctaccat 35973061  T
Q  104 ggctcaattgaagtttcacaagga 127  Q
    ||||||||| || | |||||||||    
T  35973060 ggctcaattaaaatatcacaagga 35973037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 35994572 - 35994449
Alignment:
Q  4 tttgggctgtcaaaatggaagcttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactat 103  Q
    ||||||| || | ||||||  |||||||||| |||||||  |||||||| ||| | |||||||||| |||||||| ||||||||| |||||||| || ||    
T  35994572 tttgggcagtaagaatggagtcttacctagaggctttggatgtttgggaggccgttgaagaggattgtgaagttcttccgctgccgaataatcctaccat 35994473  T
Q  104 ggctcaattgaagtttcacaagga 127  Q
    ||||||||| || | |||||||||    
T  35994472 ggctcaattaaaatatcacaagga 35994449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 43582949 - 43583051
Alignment:
Q  25 cttacctagaagctttgggcgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactatggctcaattgaagtttcacaa 124  Q
    |||||||||| |||||||  |||||||| | | | ||||||||||||||||||| ||||||||| |||||||| || ||||||||||| || | ||||||    
T  43582949 cttacctagaggctttggatgtttgggaggtcgttgaagaggattatgaagttcttccgctgccgaataatcctaccatggctcaattaaaatatcacaa 43583048  T
Q  125 gga 127  Q
    |||    
T  43583049 gga 43583051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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