View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_32 (Length: 249)
Name: NF10038_low_32
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 379791 - 380024
Alignment:
| Q |
1 |
tgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggtcaggtaaatatgttcaaatccatttgactattttcctggttacttggtagat |
100 |
Q |
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| T |
379791 |
tgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt-----aaatatgttcaaatccttttgaatattttcctggttacttggtagat |
379885 |
T |
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| Q |
101 |
acgctaaaagggtgtcttttgaaattactcagttctcatttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgactttgaaatgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
379886 |
acgctaaaagggtgtcttttgaaattactcagttctcatttagatgcattgtcacaaaaatagtcccgattgcatcaaaatattcgactttaaaatgttt |
379985 |
T |
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| Q |
201 |
tatgtgcatggagggagtattcattgatttccaatctgt |
239 |
Q |
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| T |
379986 |
tatgtgcatggagggagtattcattgatttccaatctgt |
380024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 6299225 - 6299323
Alignment:
| Q |
137 |
catttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgactttgaaatgttttatgtgcatggagggagtattcattgatttccaatc |
236 |
Q |
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| T |
6299225 |
catttagatgcattgtcacaaaaataaccctgattgcatcaaaatattagactttgaaatgtttgatatgcat----ggagtattcactgatttccattc |
6299320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 6306035 - 6306133
Alignment:
| Q |
137 |
catttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgactttgaaatgttttatgtgcatggagggagtattcattgatttccaatc |
236 |
Q |
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| T |
6306035 |
catttagatgcattgtcacaaaaataaccctgattgcatcaaaatattagactttgaaatgtttgatatgcat----ggagtattcactgatttccattc |
6306130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6298709 - 6298756
Alignment:
| Q |
1 |
tgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt |
48 |
Q |
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| T |
6298709 |
tgaagatgttcaaggtgttgattctgcaaaagtagaactcatggaggt |
6298756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6305519 - 6305566
Alignment:
| Q |
1 |
tgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt |
48 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6305519 |
tgaagatgttcaaggtgttgattctgcaaaagtagaactcatggaggt |
6305566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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