View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_36 (Length: 239)
Name: NF10038_low_36
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 19272181 - 19272394
Alignment:
| Q |
16 |
catgtatctatagatctatggaccatggtagtttgaaagagacaatatatttgagagttaatccaagacataaactacatatgttgatgggttttatgca |
115 |
Q |
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| T |
19272181 |
catgtatctatagatctatggaccatggtagtttgaaagagacaatatatttgagagttaatccaagacataaactatatatgttgatggattttatgca |
19272280 |
T |
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| Q |
116 |
ataaaagaggatacaaat-atttctgacgatacaattagaactgtcaaaatggtccattgagatggacaaaaaagtccaatac------actttaaaaac |
208 |
Q |
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| T |
19272281 |
acaaa--aggatacaaatgctttctgatgatgcaactagaactgtcaaaatggtccattaagatggacaaaaaagtccaatacacatgaactttaaaaac |
19272378 |
T |
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| Q |
209 |
actatcaagttcgacc |
224 |
Q |
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| T |
19272379 |
actatcaaattcgacc |
19272394 |
T |
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