View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_39 (Length: 212)
Name: NF10038_low_39
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 35036014 - 35035833
Alignment:
| Q |
11 |
gagaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcacggtgaagat |
110 |
Q |
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| T |
35036014 |
gagaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcactgtgaagat |
35035915 |
T |
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| Q |
111 |
ggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaa |
192 |
Q |
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| T |
35035914 |
ggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaa |
35035833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 35019813 - 35019635
Alignment:
| Q |
13 |
gaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcacggtgaagatgg |
112 |
Q |
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|||||||| | |||||||||||| || ||||||||| | | ||||| ||||||| || ||||| ||| |||||||||||||| ||||||||||||| |
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| T |
35019813 |
gaagcaaaagttttgtcgtttacggtaaaacactgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacggtgaagatgg |
35019714 |
T |
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| Q |
113 |
ctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaa |
191 |
Q |
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| T |
35019713 |
gtccgtatttgtcggctaagtttcctaaggtgacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaa |
35019635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 35029905 - 35029726
Alignment:
| Q |
13 |
gaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcacggtgaag-atg |
111 |
Q |
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|||||||| | |||||| ||||| |||||||| ||| | | ||||| ||||||| |||||||| ||| |||||||||||||| ||||||||| ||| |
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| T |
35029905 |
gaagcaaaagttttgtcatttacggtgaaacattgtttcaccatttcataactgcttacaactaaggttttgtgaacacctaaacgaacggtgaaggatg |
35029806 |
T |
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| Q |
112 |
gctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaa |
191 |
Q |
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| T |
35029805 |
ggtccgtatttgtcggctaagtttcctaaggtaacgtgaggtggttgggacccacctaagaggtggaggtggccaattaa |
35029726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 35044175 - 35043998
Alignment:
| Q |
11 |
gagaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcacggtgaagat |
110 |
Q |
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|||||||||||||| | |||||||||||||| || ||| | || ||||| |||||||| | ||||| ||| |||||||| ||||| | ||||||||| |
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| T |
35044175 |
gagaagcaaaggctctatcgtttacagtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagat |
35044076 |
T |
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| Q |
111 |
ggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgat |
188 |
Q |
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| T |
35044075 |
aggtccgtatttatcggctagcttccctaaggtgacatgaggtggctgggatccacctaagaggtggaggtggccgat |
35043998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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