View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_5 (Length: 479)
Name: NF10038_low_5
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 70 - 466
Target Start/End: Original strand, 6497990 - 6498387
Alignment:
| Q |
70 |
ctttggtgttctgtattctcagttttaccaatgcacctattaagtaaatacacagacccattaatttctttatgaaaggaacactaacccattgatattc |
169 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6497990 |
ctttagtgttctgtattctcagttttaccaatgcacctattaagtaaatacacagacccattaatttctttttgaaaggaacactaacccattgatattc |
6498089 |
T |
|
| Q |
170 |
aaacatcttcatattaaaaacgtggcactacaagtgtgaggcaattgtatttattctacccattccttttgttttgtactctgctgtgttgttttgctta |
269 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6498090 |
aaacatcttcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactctgctgtgttgttttgctta |
6498189 |
T |
|
| Q |
270 |
tttggagtttttagttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaaattttcggggtgtgagttggag-nnnn |
368 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
6498190 |
tttggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagttggagttttt |
6498289 |
T |
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| Q |
369 |
nnnnnactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgaccccttcttgatcctacctatg |
466 |
Q |
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| T |
6498290 |
tttttactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgaccccttcttgatcctgcctatg |
6498387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6497602 - 6497672
Alignment:
| Q |
1 |
tcctcattaaggtataataactataatcatcggattttacaaaagatacttgcgatcataacaaaagttct |
71 |
Q |
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| T |
6497602 |
tcctcattaaggtatactaactataaccatcgcattttacaaaagatacttgcgatcataacaaaagttct |
6497672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 70 - 466
Target Start/End: Original strand, 31732999 - 31733396
Alignment:
| Q |
70 |
ctttggtgttctgtattctcagttttaccaatgcacctattaagtaaatacacagacccattaatttctttatgaaaggaacactaacccattgatattc |
169 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31732999 |
ctttagtgttctgtattctcagttttaccaatacacctattaagtaaatacatagacccattaatttctttttgaaaggaacactaacccattgatattc |
31733098 |
T |
|
| Q |
170 |
aaacatcttcatattaaaaacgtggcactacaagtgtgaggcaattgtatttattctacccattccttttgttttgtactctgctgtgttgttttgctta |
269 |
Q |
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| T |
31733099 |
aaacatcttcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttgttttgtactgtgctgtgtggttttgctta |
31733198 |
T |
|
| Q |
270 |
tttggagtttttagttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaaattttcggggtgtgagttggag-nnnn |
368 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
31733199 |
tttggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttggggtgtgagttggagttttt |
31733298 |
T |
|
| Q |
369 |
nnnnnactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgaccccttcttgatcctacctatg |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
31733299 |
ttttgactgaactatgctgtgaaattggtaggatcttatgctatgtgttcagatcccgcgatttgtgatattgtgaccccttctcgatcctgcctatg |
31733396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 70 - 339
Target Start/End: Original strand, 31735677 - 31735946
Alignment:
| Q |
70 |
ctttggtgttctgtattctcagttttaccaatgcacctattaagtaaatacacagacccattaatttctttatgaaaggaacactaacccattgatattc |
169 |
Q |
| |
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|||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
31735677 |
ctttagtgttctttattctcagttttaccaatgtacttattaagtaaatacacagacccattaatttctttttgaaaggaacactaacccatcgatattc |
31735776 |
T |
|
| Q |
170 |
aaaca-tcttcatattaaaaacgtggcactacaa-gtgtgaggcaattgtatttattctacccattccttttgttttgtactctgctgtgttgttttgct |
267 |
Q |
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||||| | ||| ||| |||||| || |||| ||| || |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
31735777 |
aaacatttttcgtataaaaaacatgacactgcaacgtctgaggcaattgtttttattctactcattccttttgttttgtactc--ctgtgttgttttgct |
31735874 |
T |
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| Q |
268 |
tatttggagtttttagttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcat |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |
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| T |
31735875 |
tatttggagtttttagttgtggcatttgacctttgtatgactatatgttgtgatcctgaattggagtttcat |
31735946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 466
Target Start/End: Original strand, 31736020 - 31736065
Alignment:
| Q |
421 |
atcccgcgatttgtgatattgtgaccccttcttgatcctacctatg |
466 |
Q |
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|||||| ||||||||||||||||| ||||||||| |||| |||||| |
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| T |
31736020 |
atcccgtgatttgtgatattgtgatcccttcttggtcctgcctatg |
31736065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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