View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10038_low_8 (Length: 448)
Name: NF10038_low_8
Description: NF10038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10038_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 38626541 - 38626112
Alignment:
| Q |
14 |
agaaataccatttgaatgaaagatgaggcattcaaaccacttc-----tatcatatttaattatatggttgatgtatttggtgactatagcttgagtaaa |
108 |
Q |
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| T |
38626541 |
agaaataccatttgaatgaaagatgaggcattcaaaccacttcacttctatcatata-aattatatggttgatgtatttggtgactatagcttgagtgaa |
38626443 |
T |
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| Q |
109 |
ttagacgaatccgacatatggtatccagttgtgagtataaataagagacgacagacatttgtttggagttttcgcagttgaacaagtgaaaagagactaa |
208 |
Q |
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| T |
38626442 |
ttagacgaatccgacatatggtatccagttgtgagtataaataagagacgacagacatttgtttggagttttcccagttgaacaagtgaaaagagactaa |
38626343 |
T |
|
| Q |
209 |
gaatacatgacagaatgatcatcaataaacaaatgcagtaaaggaaatgaaaactactcagtctcagatcctgttatattaatcaataacgatatagcaa |
308 |
Q |
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| T |
38626342 |
gaatacatgacagaatgataatcaataaacaaatgcagtaaaggaaatgaaaactactcagtctcagatcctgttatattaatcaataacgatatagcaa |
38626243 |
T |
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| Q |
309 |
t------ttgcacactataagcaagagcagtttcctatacatcatgcattctcaaatccataatagcccaaatggttcaatgttatacatagcatttgaa |
402 |
Q |
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| T |
38626242 |
ttatatcttgcacactataagtaagagcagtttcctatacatcatgcattctcaaatccataatagcccaaatggttcaatgttatacatagcatttgaa |
38626143 |
T |
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| Q |
403 |
agataaataagaatgcaataattggtgaaac |
433 |
Q |
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| T |
38626142 |
agataaataagaatgcaataattggtgaaac |
38626112 |
T |
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