View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_high_11 (Length: 399)
Name: NF10039_high_11
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 33 - 385
Target Start/End: Complemental strand, 5365107 - 5364755
Alignment:
| Q |
33 |
cgatgataatgaaatcattcagacctattagcaaacctttcaacattatgatcagtcaaattaagcccaaccatggcttcacccaatccacaactaacct |
132 |
Q |
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| T |
5365107 |
cgatgataatgaaatcattcagacctattagcaaacctttcaacattatgatcagtcaaattaagcccaaccatagcttcacccaatccacaactaacct |
5365008 |
T |
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| Q |
133 |
cagccaaaatctcaggatcactgtaatgagtaacagcttgaacaatcgccctcgctcttttcgccggatccccactcttaaacacaccagaaccaacaaa |
232 |
Q |
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| T |
5365007 |
cagccaaaatctctggatcactgtaatgagtaacagcttgaacaatcgccctcgctcttttcgccggatccccactcttaaacacaccagaaccaacaaa |
5364908 |
T |
|
| Q |
233 |
aacaccatcacacccaagctgcatcatcaaagctgcatccgccggtgtcgccacaccaccagcagcaaactgcacaacaggcagccttccaagttgctta |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5364907 |
aacaccatcacacccaagctgcatcatcaaagctgcatccgctggtgtcgccacaccaccagcagcaaactgcacaacaggcagccttccaagttgctta |
5364808 |
T |
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| Q |
333 |
gtctgcataacaagatcataaggagcaccaattttcttagcaaaagtgaaaac |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5364807 |
gtctgcataacaagatcataaggagcaccaattttcttagcaaaagtgaaaac |
5364755 |
T |
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