View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10039_high_12 (Length: 388)

Name: NF10039_high_12
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10039_high_12
NF10039_high_12
[»] chr7 (1 HSPs)
chr7 (20-375)||(11362319-11362684)
[»] chr6 (2 HSPs)
chr6 (20-375)||(4059271-4059633)
chr6 (178-239)||(7863572-7863633)
[»] chr4 (2 HSPs)
chr4 (44-375)||(7653325-7653656)
chr4 (188-375)||(9109688-9109870)
[»] chr5 (2 HSPs)
chr5 (143-375)||(21903110-21903352)
chr5 (20-147)||(21905441-21905568)
[»] chr3 (1 HSPs)
chr3 (43-375)||(20592372-20592722)
[»] chr2 (1 HSPs)
chr2 (256-375)||(33172140-33172261)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 11362319 - 11362684
Alignment:
Q  20 gaactcaaaccccaaaccaccaccgttctcccttttcgtccattttcaatcgatacccaatctcaaaccactaccgtgaaacccaaagtcggaccccaaa 119  Q
    ||||||| | ||||||||||||||||||||||||||| ||||||||||||||  ||||||||  ||||||| |||||||||||||||||| |||||||||    
T  11362319 gaactcagaacccaaaccaccaccgttctcccttttcctccattttcaatcgtaacccaatcctaaaccaccaccgtgaaacccaaagtcagaccccaaa 11362418  T
Q  120 ccaccgtgaaacaccatctctgcaccatcgttgtctctctccatcgctttctctgtacatcttcaacgtctgtctcaaattccagctcaaaaaggtaaca 219  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | ||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  11362419 ccaccgtgaaacaccatctctgcaccatcgttgtctctctacatcgttgtctcgctacatcttcaacgtcggtctcaaattccagctcaaaaaggtaaca 11362518  T
Q  220 taactcaaatcc-ttcttcaactaacttcaatctatgtatttttgttttgattttcattttgaaattgtttctcataagctatcgcac--------agtc 310  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||        ||||    
T  11362519 taactcaaatcctttcttcaactaacttcaatctatgtatttttgtttcgattttcattttgaaattgtttctctgaagctatcgcacaatcgccgagtc 11362618  T
Q  311 gccgtgaaacc--gttccgtcttcgtcgccgccaaatcgtaatttctaggtaaatcttctaatctct 375  Q
    |||||||||||  ||||| |||||||||| || ||||||||||||||||||||||||||||||||||    
T  11362619 gccgtgaaaccatgttcc-tcttcgtcgctgcgaaatcgtaatttctaggtaaatcttctaatctct 11362684  T

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Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 4059271 - 4059633
Alignment:
Q  20 gaactcaaaccccaaaccaccaccgttctcccttttcgtccattttcaatcgatacccaatctcaaaccactaccgtgaaacccaaagtcggaccccaaa 119  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||||||   |||||||| |||||||| |||||||||||||||||| |||||||||    
T  4059271 gaactcagaacccaaaccaccaccgttctcccttttcctccattttcaatcataacccaatcccaaaccaccaccgtgaaacccaaagtcagaccccaaa 4059370  T
Q  120 ccaccgtgaaacaccatctctgcaccatcgttgtctctctccatcgctttctctgtacatcttcaacgtctgtctcaaattccagctcaaaaaggtaaca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||| ||||||||||||||    
T  4059371 ccaccgtgaaacaccatctctgcaccatcgttgtctctctccatcgctgtctcgctacatcttcaacgtcggtctcaaattccagatcaaaaaggtaaca 4059470  T
Q  220 taactcaaatcc-ttcttcaactaacttcaatctatgtatttttgttttgattttcattttgaaattgtttctcataagctatcgcac--------agtc 310  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||        ||||    
T  4059471 taactcaaatcctttcttcaactaacttcaatctatgtatttttgtttcaattttcattttgaaattgtttctctaaagctatcgcacaatcgccgagtc 4059570  T
Q  311 gccgtgaaacc--gttccgtcttcgtcgccgccaaatcgtaatttctaggtaaatcttctaatctct 375  Q
    |||||||||||  ||||| |||||||   ||| | ||||||||||||||||||||||||||||||||    
T  4059571 gccgtgaaaccatgttcc-tcttcgt---cgcgacatcgtaatttctaggtaaatcttctaatctct 4059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 7863633 - 7863572
Alignment:
Q  178 atcttcaacgtctgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  7863633 atcttcaacgtctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaa 7863572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 44 - 375
Target Start/End: Complemental strand, 7653656 - 7653325
Alignment:
Q  44 gttctcccttttcgtccattttcaatcgatacccaatctc-aaaccactaccgtgaaacccaaagtcggaccccaaaccaccgtgaaacaccatctctgc 142  Q
    ||||||||||||| |||||| |||||||| || ||||| | ||||||| ||||||||||||||| || ||||||||||||||||||||||||||||        
T  7653656 gttctcccttttcctccattctcaatcgaaacacaatccccaaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacaccatct---- 7653561  T
Q  143 accatcgttgtctctctccatcgctttctctgtacatcttcaacgtctgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaacta 242  Q
           |||||||||| ||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653560 -------ttgtctctcttcatcgctgtctctctgcatcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaacta 7653468  T
Q  243 acttcaatctatgtatttttgttttgattttcattttgaaattgtttctcataagctatcgcac--------agtcgccgtgaaac--cgttccgtcttc 332  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||        ||||||||||||||   ||||| |||||    
T  7653467 acttcaatctatgtatttttgttttgattttcgttttgaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaacagtgttccatcttc 7653368  T
Q  333 gtcgccgccaaatcgtaatttctaggtaaatcttctaatctct 375  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  7653367 gtcgccgcgaaatcgtaatttctaggtaaatcttctaatctct 7653325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 188 - 375
Target Start/End: Complemental strand, 9109870 - 9109688
Alignment:
Q  188 tctgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcattttgaaattgt 287  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9109870 tctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaactaacttcaatctatgt-tttttgttttgattttcattttgaaattgt 9109772  T
Q  288 ttctcataagctatcgcacagtcgccgtgaaacc--gttccgtcttcgtcgccgccaaatcgtaatttctaggtaaatcttctaatctct 375  Q
    ||||||  ||||||||      |||||| |||||  |||||||| ||| |||||| ||||||||||||||||||||||| | ||||||||    
T  9109771 ttctcaatagctatcg------cgccgtcaaaccgtgttccgtcatcgccgccgcgaaatcgtaatttctaggtaaatcctgtaatctct 9109688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 143 - 375
Target Start/End: Complemental strand, 21903352 - 21903110
Alignment:
Q  143 accatcgttgtctctctccatcgctttctctgtacatcttcaacgtctgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaacta 242  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21903352 accatcgttgtctctctccatcgctgtctctctacatcttcaacgtctgtctcaaattccagctcaaaatggtaacataactcaaatccttcttcaacta 21903253  T
Q  243 acttcaatctatgtatttttgttttgattttcattttgaaattgtttctcataagctatcgcacagtc--------gccgtgaaacc--gttccgtcttc 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||  |||||||||||    
T  21903252 acttcaatctatgtatttttgttttgattttcattttgaaattgtttctcagaagctatcgcacagtcgccgagtcgccgtgaaaccgtgttccgtcttc 21903153  T
Q  333 gtcgccgccaaatcgtaatttctaggtaaatcttctaatctct 375  Q
    ||| |||| ||||||||||||||||||||||||||||||||||    
T  21903152 gtcaccgcgaaatcgtaatttctaggtaaatcttctaatctct 21903110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 21905568 - 21905441
Alignment:
Q  20 gaactcaaaccccaaaccaccaccgttctcccttttcgtccattttcaatcgatacccaatctcaaaccactaccgtgaaacccaaagtcggaccccaaa 119  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||||||||||  |||||||| |||||||| ||||||||||||||| || |||||||||    
T  21905568 gaactcagaccctaaaccaccaccgttctcctttttcgtccattttcaatcgcaacccaatcccaaaccaccaccgtgaaacccaaattcagaccccaaa 21905469  T
Q  120 ccaccgtgaaacaccatctctgcaccat 147  Q
    ||||||||||||||| ||||||||||||    
T  21905468 ccaccgtgaaacaccttctctgcaccat 21905441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 43 - 375
Target Start/End: Complemental strand, 20592722 - 20592372
Alignment:
Q  43 cgttctcccttttcgtccattttcaatcgatacccaatctc-aaaccactaccgtgaaacccaaagtcggaccccaaaccaccgtgaaacaccatct--- 138  Q
    |||||||||||||| |||||| |||||||| |||||||| | ||||||| || |||||||||||  || |||||||||||||||||||||||||||        
T  20592722 cgttctcccttttcctccattctcaatcgaaacccaatccccaaaccaccactgtgaaacccaagctcagaccccaaaccaccgtgaaacaccatcgtga 20592623  T
Q  139 ----ctgcaccatcgttgtctctctccatcgctttctctgtacatcttcaacgtctgtctcaaattccagctcaaaaaggtaacataactcaaatccttc 234  Q
        |||||||||   |||||||||| ||| || ||||| | || | ||   |||| |||||||||||||||||||||||||||||||||||||||||||    
T  20592622 aacactgcaccatttctgtctctctcaatctctctctctctgcaccatctctgtctctctcaaattccagctcaaaaaggtaacataactcaaatccttc 20592523  T
Q  235 ttcaactaacttcaatctatgtatttttgttttgattttcattttgaaattgtttctcataagctatcgcac--------agtcgccgtgaaacc--gtt 324  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||        |||||||||||||||  |||    
T  20592522 ttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaattgtttctcagcagctatcgcacattcgccgagtcgccgtgaaaccgtgtt 20592423  T
Q  325 ccgtcttcgtcgccgccaaatcgtaatttctaggtaaatcttctaatctct 375  Q
    |||||||||||||||| ||||||||||||||||||||||| | ||||||||    
T  20592422 ccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcctgtaatctct 20592372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 256 - 375
Target Start/End: Original strand, 33172140 - 33172261
Alignment:
Q  256 tatttttgttttgattttcattttgaaattgtttctcataagctatcgcacagtcgccgtgaaacc--gttccgtcttcgtcgccgccaaatcgtaattt 353  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||||| ||||||| ||||||||||||    
T  33172140 tatttttgttttgattttcgttttgaaattgtttctcagcagctatcgcacagtcgccgtgaaaccttgttccgtcttcatcgccgcgaaatcgtaattt 33172239  T
Q  354 ctaggtaaatcttctaatctct 375  Q
    ||||||||||||||||||||||    
T  33172240 ctaggtaaatcttctaatctct 33172261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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