View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10039_high_24 (Length: 250)

Name: NF10039_high_24
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10039_high_24
NF10039_high_24
[»] chr8 (6 HSPs)
chr8 (27-245)||(9635628-9635846)
chr8 (35-239)||(9578770-9578974)
chr8 (49-239)||(28860921-28861110)
chr8 (115-239)||(43326037-43326161)
chr8 (111-228)||(2822857-2822972)
chr8 (199-239)||(38760995-38761035)
[»] chr3 (3 HSPs)
chr3 (46-245)||(18370388-18370587)
chr3 (115-239)||(29109798-29109922)
chr3 (115-239)||(28685721-28685843)
[»] chr5 (2 HSPs)
chr5 (111-239)||(8205301-8205429)
chr5 (161-239)||(8225193-8225271)
[»] chr7 (1 HSPs)
chr7 (111-239)||(38369270-38369398)
[»] chr2 (2 HSPs)
chr2 (111-239)||(31569848-31569976)
chr2 (140-239)||(11739096-11739195)
[»] scaffold0380 (1 HSPs)
scaffold0380 (115-209)||(602-696)
[»] scaffold0091 (2 HSPs)
scaffold0091 (31-93)||(15066-15128)
scaffold0091 (183-239)||(13666-13722)
[»] chr1 (1 HSPs)
chr1 (161-216)||(52860034-52860089)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 27 - 245
Target Start/End: Complemental strand, 9635846 - 9635628
Alignment:
Q  27 ctatagtataataaagacaaacaaaattaattgaatgaaaatagagatgaggggtataataggaatacnnnnnnncacttcttctctccttctatttctt 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||| |||||||||||||||||||||    
T  9635846 ctatagtataataaagacaaacaaaattaattgaatgaaaatagagatgaggggtataataggaatgcaaaaaaacacctcttctctccttctatttctt 9635747  T
Q  127 ctcaattatggggagaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaagtttactatctct 226  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9635746 ctcaattatggggagaaagaatattgtgtgggacccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaagtttactatctct 9635647  T
Q  227 cttcaacttctctgctcct 245  Q
    ||||||||||||| |||||    
T  9635646 cttcaacttctctcctcct 9635628  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 9578974 - 9578770
Alignment:
Q  35 taataaagacaaacaaaattaattgaatgaaaatagagatgaggggtataataggaatacnnnnnnncacttcttctctccttctatttcttctcaatta 134  Q
    |||||||| || |||||| ||||||||||||||  || ||||||||||||||||||||||        |    ||||||||||||||||||||||| ||     
T  9578974 taataaaggcatacaaaactaattgaatgaaaagtgaaatgaggggtataataggaatacaacaaagaatcctttctctccttctatttcttctcagttt 9578875  T
Q  135 tggggagaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaagtttactatctctcttcaact 234  Q
    || ||||||||||| ||| |||||||||| | |||||||| |||||| |||| ||||||||| ||| |||||||||||| || || ||||||||||||||    
T  9578874 tgaggagaaagaattttgcgtgggatccataactttttagcctctcttccctatttctcttcactatcaaacaggagaaattcaccatctctcttcaact 9578775  T
Q  235 tctct 239  Q
    |||||    
T  9578774 tctct 9578770  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 28860921 - 28861110
Alignment:
Q  49 aaaattaattgaatgaaaatagagatgaggggtataataggaatacnnnnnnncacttcttctctccttctatttcttctcaattatggggagaaagaat 148  Q
    |||||||||||||| |||| ||| ||||||| |||||||||||||        ||   | |||||||||||||||||  ||| |||||||||||||||||    
T  28860921 aaaattaattgaataaaaagagaaatgagggatataataggaatatgaaaaagcatcccatctctccttctatttctcgtcagttatggggagaaagaat 28861020  T
Q  149 attgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaagtttactatctctcttcaacttctct 239  Q
     |||| |||||||| | ||||||||||| ||||||||| ||||||||| |||| |||||||||||||| || |||||||||||||||||||    
T  28861021 tttgtttgggatcc-ctgctttttagtcgctctcccctatttctcttcactactaaacaggagaagttcaccatctctcttcaacttctct 28861110  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 43326037 - 43326161
Alignment:
Q  115 cttctatttcttctcaattatggggagaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaag 214  Q
    |||||||||||| ||  ||||| ||||||||||| |||||||||| ||||| |||||||||||||||||| | ||||||||| | |||||  |||||||     
T  43326037 cttctatttcttttcggttatgaggagaaagaattttgtgtgggacccacaactttttagtctctctcccttatttctcttcacaaccaagtaggagaaa 43326136  T
Q  215 tttactatctctcttcaacttctct 239  Q
    || || |||||||||||| ||||||    
T  43326137 ttcaccatctctcttcaatttctct 43326161  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 2822857 - 2822972
Alignment:
Q  111 tctccttctatttcttctcaattatggggagaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacagga 210  Q
    ||||||||  |||||||| || | ||| |||||||  | ||||||||| ||||||  ||||||||||||||  ||| ||||||||| ||||||| |||||    
T  2822857 tctccttcactttcttcttaactttggagagaaagggttttgtgtggggtccacatatttttagtctctct--cctatttctcttcactaccaaccagga 2822954  T
Q  211 gaagtttactatctctct 228  Q
    ||| || ||| |||||||    
T  2822955 gaacttcactctctctct 2822972  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 38760995 - 38761035
Alignment:
Q  199 taccaaacaggagaagtttactatctctcttcaacttctct 239  Q
    |||||||||||||||||||  ||||||||||||| ||||||    
T  38760995 taccaaacaggagaagtttgatatctctcttcaatttctct 38761035  T

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Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 18370587 - 18370388
Alignment:
Q  46 aacaaaattaattgaatgaaaatagagatgaggggtataataggaatacnnnnnnncacttcttctctccttctatttcttctcaatta---tggggaga 142  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||        ||| |||| ||||||||||||||||||||||||   ||||||||    
T  18370587 aacaaaattaattgaatgaaaagaatgatgaggggtataataggaata---aaaaacacctcttttctccttctatttcttctcaattacggtggggaga 18370491  T
Q  143 aagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaagtttactatctctcttcaacttctctgct 242  Q
    |||||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||    
T  18370490 aagaattttgtgtgggacccacatctttttagtctcactcccctgtttctcttctctaccaatcaggagaagtttactatctctcttcaatttctctcct 18370391  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 29109798 - 29109922
Alignment:
Q  115 cttctatttcttctcaattatggggagaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaag 214  Q
    |||| ||||||||||| || |||||||||||||| |||||||||| ||| |  |||||| ||||||| | || ||||||||| ||||||||||||  ||     
T  29109798 cttccatttcttctcacttgtggggagaaagaattttgtgtgggacccatatgtttttaatctctcttctctatttctcttcactaccaaacagggtaaa 29109897  T
Q  215 tttactatctctcttcaacttctct 239  Q
    || | |||||||||| || ||||||    
T  29109898 ttcattatctctctttaatttctct 29109922  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 28685843 - 28685721
Alignment:
Q  115 cttctatttcttctcaattatggggagaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaag 214  Q
    |||| ||||||| ||| || |||||||||| ||| || ||||||| |||||  |||| | ||||||| |||| ||||||| | | |||||||| || ||     
T  28685843 cttccatttcttatcagttttggggagaaaaaatcttttgtgggacccacatattttaa-tctctcttccctatttctct-caccaccaaacacgataac 28685746  T
Q  215 tttactatctctcttcaacttctct 239  Q
    || ||||||||||||||| ||||||    
T  28685745 ttcactatctctcttcaatttctct 28685721  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 8205429 - 8205301
Alignment:
Q  111 tctccttctatttcttctcaattatggggagaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacagga 210  Q
    ||||||||  ||||||||||| | ||| ||||||| || || |||||| ||||||  ||||||||||||||||||| ||||||||| |||||||||||||    
T  8205429 tctccttcactttcttctcaactttggagagaaaggattttatgtggggtccacatgtttttagtctctctcccctatttctcttcactaccaaacagga 8205330  T
Q  211 gaagtttactatctctcttcaacttctct 239  Q
    ||| || ||| ||||||||||| ||||||    
T  8205329 gaacttcactctctctcttcaatttctct 8205301  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 8225193 - 8225271
Alignment:
Q  161 ccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaagtttactatctctcttcaacttctct 239  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |  |||||||||||||||||||    
T  8225193 ccacagctttttagtctctctcccctatttctcttcactaccaaacaggagaagttcatcatctctcttcaacttctct 8225271  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 38369398 - 38369270
Alignment:
Q  111 tctccttctatttcttctcaattatggggagaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacagga 210  Q
    ||||||||  ||||||||||| | ||| ||||||| || || |||||| ||||||  ||||||||||||||||||| ||||||||| |||||||| ||||    
T  38369398 tctccttcactttcttctcaactttggagagaaaggattttatgtggggtccacatgtttttagtctctctcccctatttctcttcactaccaaatagga 38369299  T
Q  211 gaagtttactatctctcttcaacttctct 239  Q
    ||| || ||| |||||||| || ||||||    
T  38369298 gaacttcactctctctctttaatttctct 38369270  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 31569976 - 31569848
Alignment:
Q  111 tctccttctatttcttctcaattatggggagaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacagga 210  Q
    ||||||||  ||||||||||| | ||| ||||||  || || |||||| ||||||  ||||||||||||||||||| ||||||||| |||||||||| ||    
T  31569976 tctccttcactttcttctcaactttggagagaaaagattttatgtggggtccacatgtttttagtctctctcccctatttctcttcactaccaaacatga 31569877  T
Q  211 gaagtttactatctctcttcaacttctct 239  Q
     || || ||| ||||||||||| ||||||    
T  31569876 caacttcactctctctcttcaatttctct 31569848  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 11739096 - 11739195
Alignment:
Q  140 agaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaagtttactatctctcttcaacttctct 239  Q
    ||||||||| |||||||||| |||||   |||||| ||||||||||| ||||||||| ||||| || |||  ||||| |  |||||||||||||||||||    
T  11739096 agaaagaattttgtgtgggacccacaatattttagcctctctcccctatttctcttcactaccgaagagggaaagttcatcatctctcttcaacttctct 11739195  T

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Target: scaffold0380 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 602 - 696
Alignment:
Q  115 cttctatttcttctcaattatggggagaaagaatattgtgtgggatccacagctttttagtctctctcccctgtttctcttctctaccaaacagg 209  Q
    |||| ||||||||||| || |||||||||||||| |||||||||| ||| |  |||||| ||||||| | || ||||||||| ||||||||||||    
T  602 cttccatttcttctcacttttggggagaaagaattttgtgtgggacccatatgtttttaatctctcttctctatttctcttcactaccaaacagg 696  T

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Target: scaffold0091 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 15128 - 15066
Alignment:
Q  31 agtataataaagacaaacaaaattaattgaatgaaaatagagatgaggggtataataggaata 93  Q
    |||||||||||| || | ||||||||||||||||||| ||| |||||||||| ||||||||||    
T  15128 agtataataaaggcataaaaaattaattgaatgaaaagagaaatgaggggtaaaataggaata 15066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 13722 - 13666
Alignment:
Q  183 ccctgtttctcttctctaccaaacaggagaagtttactatctctcttcaacttctct 239  Q
    |||| ||||||||| ||| ||||||||||||||| || ||||| |||||||||||||    
T  13722 ccctatttctcttcactatcaaacaggagaagttcaccatctcacttcaacttctct 13666  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 52860089 - 52860034
Alignment:
Q  161 ccacagctttttagtctctctcccctgtttctcttctctaccaaacaggagaagtt 216  Q
    ||||| |||||||| ||||||||||| |||||||||||  || |||||||||||||    
T  52860089 ccacaactttttagcctctctcccctatttctcttctccgccgaacaggagaagtt 52860034  T

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