View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10039_high_27 (Length: 242)

Name: NF10039_high_27
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10039_high_27
NF10039_high_27
[»] chr4 (18 HSPs)
chr4 (23-224)||(39732751-39732953)
chr4 (22-224)||(5937797-5938000)
chr4 (15-224)||(50523818-50524028)
chr4 (16-142)||(16203042-16203169)
chr4 (23-130)||(28911616-28911724)
chr4 (30-206)||(8503727-8503904)
chr4 (15-130)||(53404058-53404174)
chr4 (21-100)||(26457177-26457256)
chr4 (22-122)||(49723826-49723927)
chr4 (22-130)||(53663589-53663698)
chr4 (20-84)||(30418349-30418413)
chr4 (22-82)||(38767875-38767935)
chr4 (15-102)||(22606307-22606394)
chr4 (23-85)||(29385991-29386053)
chr4 (15-85)||(28963816-28963885)
chr4 (15-80)||(48407038-48407103)
chr4 (22-104)||(51677164-51677246)
chr4 (24-85)||(45105887-45105948)
[»] chr5 (13 HSPs)
chr5 (15-222)||(10900075-10900283)
chr5 (23-224)||(19375361-19375563)
chr5 (15-224)||(40979361-40979570)
chr5 (15-130)||(2526319-2526434)
chr5 (15-130)||(53614-53730)
chr5 (19-145)||(33082857-33082984)
chr5 (16-130)||(33387644-33387759)
chr5 (15-83)||(11018376-11018444)
chr5 (15-102)||(41040083-41040170)
chr5 (15-85)||(41742169-41742239)
chr5 (15-66)||(31905530-31905581)
chr5 (22-84)||(8958457-8958519)
chr5 (15-85)||(19356582-19356652)
[»] chr2 (12 HSPs)
chr2 (23-224)||(44002588-44002790)
chr2 (15-194)||(19860224-19860404)
chr2 (40-206)||(37551516-37551684)
chr2 (15-166)||(43694963-43695114)
chr2 (15-82)||(7473602-7473669)
chr2 (15-85)||(17480895-17480965)
chr2 (15-85)||(43342224-43342294)
chr2 (15-85)||(35458132-35458202)
chr2 (15-84)||(37640708-37640777)
chr2 (15-83)||(3738995-3739063)
chr2 (21-113)||(37996770-37996863)
chr2 (21-81)||(32497162-32497222)
[»] chr3 (20 HSPs)
chr3 (21-224)||(50392773-50392977)
chr3 (59-222)||(30809752-30809916)
chr3 (15-194)||(45489058-45489238)
chr3 (15-204)||(44610772-44610961)
chr3 (15-166)||(28883689-28883841)
chr3 (15-130)||(42074427-42074543)
chr3 (15-130)||(53687324-53687440)
chr3 (15-102)||(11263755-11263842)
chr3 (23-130)||(40237334-40237442)
chr3 (15-130)||(48181104-48181220)
chr3 (15-130)||(51407499-51407615)
chr3 (15-102)||(45150662-45150749)
chr3 (15-142)||(44328682-44328803)
chr3 (15-85)||(48254451-48254521)
chr3 (15-80)||(28182456-28182521)
chr3 (23-113)||(51229779-51229870)
chr3 (15-61)||(30810813-30810859)
chr3 (15-83)||(39251559-39251627)
chr3 (24-130)||(33025754-33025861)
chr3 (21-130)||(42274553-42274662)
[»] chr8 (13 HSPs)
chr8 (15-192)||(2025486-2025664)
chr8 (16-166)||(3590073-3590224)
chr8 (15-111)||(35802291-35802388)
chr8 (15-130)||(924136-924252)
chr8 (15-112)||(13015732-13015830)
chr8 (15-85)||(33165872-33165943)
chr8 (15-85)||(8416743-8416813)
chr8 (15-85)||(22936517-22936587)
chr8 (15-85)||(45276350-45276420)
chr8 (70-198)||(7636409-7636538)
chr8 (22-66)||(36821581-36821625)
chr8 (15-130)||(35164328-35164444)
chr8 (32-104)||(37684165-37684237)
[»] chr1 (22 HSPs)
chr1 (15-198)||(3850812-3850996)
chr1 (15-224)||(41512085-41512295)
chr1 (15-212)||(24075475-24075673)
chr1 (21-224)||(42137654-42137851)
chr1 (15-130)||(11829112-11829228)
chr1 (15-163)||(1762219-1762369)
chr1 (15-128)||(31100414-31100527)
chr1 (21-107)||(46033630-46033716)
chr1 (22-104)||(11051116-11051198)
chr1 (15-85)||(13509887-13509957)
chr1 (15-130)||(47655835-47655951)
chr1 (15-104)||(27416627-27416715)
chr1 (15-66)||(50030928-50030979)
chr1 (15-85)||(6706213-6706283)
chr1 (15-83)||(49430716-49430784)
chr1 (23-84)||(7385307-7385368)
chr1 (22-79)||(11051051-11051108)
chr1 (47-166)||(27065024-27065144)
chr1 (27-83)||(44740228-44740284)
chr1 (16-80)||(45179418-45179482)
chr1 (15-62)||(4485128-4485175)
chr1 (15-55)||(27067246-27067286)
[»] scaffold0184 (1 HSPs)
scaffold0184 (15-204)||(9641-9831)
[»] chr6 (5 HSPs)
chr6 (21-214)||(20838448-20838642)
chr6 (16-166)||(30134146-30134297)
chr6 (15-130)||(4146847-4146962)
chr6 (23-85)||(10683248-10683310)
chr6 (71-147)||(27825042-27825119)
[»] chr7 (20 HSPs)
chr7 (15-204)||(298608-298797)
chr7 (15-198)||(47085636-47085820)
chr7 (15-167)||(32450749-32450902)
chr7 (60-204)||(19544500-19544645)
chr7 (23-130)||(39857112-39857220)
chr7 (15-224)||(47158170-47158383)
chr7 (14-129)||(2000115-2000230)
chr7 (21-130)||(25970468-25970578)
chr7 (15-99)||(45202538-45202622)
chr7 (21-84)||(43664767-43664830)
chr7 (15-85)||(25472712-25472782)
chr7 (15-84)||(26827710-26827779)
chr7 (22-84)||(14999950-15000012)
chr7 (15-85)||(37371160-37371230)
chr7 (15-104)||(30825252-30825341)
chr7 (15-83)||(30139776-30139844)
chr7 (23-80)||(26826468-26826525)
chr7 (16-103)||(47238917-47239004)
chr7 (15-60)||(25191809-25191854)
chr7 (71-130)||(41064644-41064704)
[»] scaffold0097 (1 HSPs)
scaffold0097 (15-85)||(33009-33079)
[»] scaffold0068 (1 HSPs)
scaffold0068 (15-85)||(37776-37846)
[»] scaffold0702 (1 HSPs)
scaffold0702 (28-164)||(4524-4661)
[»] scaffold0662 (1 HSPs)
scaffold0662 (28-164)||(3437-3574)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-62)||(91640-91683)
[»] scaffold0808 (1 HSPs)
scaffold0808 (15-85)||(4171-4241)
[»] scaffold0069 (1 HSPs)
scaffold0069 (34-62)||(16919-16947)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 39732953 - 39732751
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagctttatccagaat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  39732953 ataaaggaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccagaat 39732854  T
Q  122 tgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtacttttaagaggtgt 221  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||||||||| ||||||| |||||||||| |||    
T  39732853 tgcttttggagatgagaattgattttgagaagctgaaccaaacatgttggaattgcaaattttcacctttgaagctaccagaagtgcttttaagagttgt 39732754  T
Q  222 aga 224  Q
    |||    
T  39732753 aga 39732751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 5937797 - 5938000
Alignment:
Q  22 aataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagctttatccagaa 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||    
T  5937797 aataagggaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccataa 5937896  T
Q  121 ttgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtacttttaagaggtg 220  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||| ||||||| |||||||||||||    
T  5937897 ttgcttttggagatgagaattgattttgagaagctgaaccaaacatgctggaattgcaagttttcacttttgtagctaccagaagtgcttttaagaggtg 5937996  T
Q  221 taga 224  Q
    ||||    
T  5937997 taga 5938000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 50523818 - 50524028
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagcttta 113  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |    
T  50523818 aaagggcaataatggaaaataacaggttgtaataatcaaaatattaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttca 50523917  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtactttta 213  Q
    ||||||||||||||||| |||||||||||||||||||||| | ||||||||||| || |||||||| | |||||||||||||||||||||| | ||||||    
T  50523918 tccagaattgcttttggagatgagaattgattttgagaagttgaaccaaacatattgaaattgcaagtgttcacttttgaagctatcagaaatgctttta 50524017  T
Q  214 agaggtgtaga 224  Q
     ||||||||||    
T  50524018 ggaggtgtaga 50524028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 16203042 - 16203169
Alignment:
Q  16 aaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttat 114  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||||  ||||||||||||||||| |||||||| |     
T  16203042 aaggacgataaaggaaaataatgggttgtaataattaaaatataaaatttaatggagaattgattctagtcaactcaaaagctaggaattgtagcttcaa 16203141  T
Q  115 ccagaattgcttttggtgatgagaattg 142  Q
    ||| |||||||||||| || ||||||||    
T  16203142 ccaaaattgcttttggagaagagaattg 16203169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 28911724 - 28911616
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaat 121  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||||| |||||| |||||||| ||||| |||    
T  28911724 ataaaggaaaataatgggttgtaataatcaaaatataaaatttaatggagaattgattttagttaactcaaaagttaggaattgtagcttcatccacaat 28911625  T
Q  122 tgcttttgg 130  Q
    |||||||||    
T  28911624 tgcttttgg 28911616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 8503904 - 8503727
Alignment:
Q  30 aaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaattgctttt 128  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||||||||| |||| |||||| |||||| |||||||| | | | ||||| ||||    
T  8503904 aaaataataggttataataatcaaaatataaaatttattggaaaattgattctagttaacacaaaagttaggaattgtagcttcaactaaaattgatttt 8503805  T
Q  129 ggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagt 206  Q
     | |||||||||| ||||||| ||  | |||| |||    ||||||||  | |||||||| || ||||||||||||||    
T  8503804 agagatgagaattaattttgaaaaattgaaccgaactcgttggaattgttagttttcactattaaagctatcagaagt 8503727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 53404058 - 53404174
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||| |  | ||||||||||||  ||  ||||||||||||| ||||||||||    
T  53404058 aaaggataataaaggaaaacaataggttgtaataatcaaaatataaaatttaatgtaaaattgattctaggaaaaccaaaagctaggaattgtagcttta 53404157  T
Q  114 tccagaattgcttttgg 130  Q
       ||||||||||||||    
T  53404158 aggagaattgcttttgg 53404174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 26457256 - 26457177
Alignment:
Q  21 caataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctag 100  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||    
T  26457256 caataaagggaaataataggatgtaataattaaaatataaaatttattggagaattgattctagttaacccaaaagctag 26457177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 49723927 - 49723826
Alignment:
Q  22 aataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| |   ||||||||| ||| |||||||||| | ||||    
T  49723927 aataaaggaaaataataggttgtaataatcaaaatataaaatttaatatagaattgattctagaaataccaaaagctaagaattgtagctttaacgagaa 49723828  T
Q  121 tt 122  Q
    ||    
T  49723827 tt 49723826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 53663589 - 53663698
Alignment:
Q  22 aataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||| |||  ||  |||||| |||||| ||||||||||   | ||    
T  53663589 aataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattataggaaagccaaaagttaggaattgtagctttaaggataa 53663688  T
Q  121 ttgcttttgg 130  Q
    ||||||||||    
T  53663689 ttgcttttgg 53663698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 30418349 - 30418413
Alignment:
Q  20 acaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctag 84  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |  ||||||||||||||    
T  30418349 acaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctag 30418413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 38767935 - 38767875
Alignment:
Q  22 aataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  38767935 aataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattct 38767875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 22606307 - 22606394
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctagga 102  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |  |||||||||||| |  || |||||||||||||    
T  22606307 aaagggcaataaagaaaaataataggctgtaataatcaaaatataaaatttaatatagaattgattcttggaaagtcaaaagctagga 22606394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 29385991 - 29386053
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  29385991 ataaagaaaaataataggttgtaataatcaaaataaaaaatttattgtagaattgattctaga 29386053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 28963816 - 28963885
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |||||||| |  |||||||||||||||    
T  28963816 aaagggcaataaag-aaaataataggttgtaataatcaaaatagaaaatttaatatagaattgattctaga 28963885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 48407103 - 48407038
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgatt 80  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||| |  ||||||||||    
T  48407103 aaagggcaataaagaaaaataatagattgtaataatcaaaatataaaatttaatgtagaattgatt 48407038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 51677246 - 51677164
Alignment:
Q  22 aataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat 104  Q
    |||||| |||||||||  | ||||||||| ||||||||||||||| | || ||||||||||||  |||||||||| |||||||    
T  51677246 aataaaagaaaataatgagctgtaataattaaaatataaaatttaatggaaaattgattctagtaaactcaaaagttaggaat 51677164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 45105948 - 45105887
Alignment:
Q  24 taaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||||||||||||||| | ||||||||||||||| ||||| | |  |||||||||||||||    
T  45105948 taaaggaaaataataggctttaataatcaaaatattaaattgaatgtagaattgattctaga 45105887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 10900283 - 10900075
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagcttta 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||| |    
T  10900283 aaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagttaggaattgtagcttca 10900184  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtactttta 213  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| || |||||||  |||||    
T  10900183 tccagaattgcttttggagatgagaattgattttgagaagctgaaccaaacatgttggaattgcaaattttcacttttgaagttaccagaagtgttttta 10900084  T
Q  214 agaggtgta 222  Q
    |||||||||    
T  10900083 agaggtgta 10900075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 19375361 - 19375563
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagctttatccagaat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||    
T  19375361 ataaaggaaaataataggttgtaataatcaaaatataaaatttattagagaattgattctagctaactcaaaagttaggaattgtagcttcatccagaat 19375460  T
Q  122 tgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtacttttaagaggtgt 221  Q
    ||||||||| |||||||||||||||||||||||| |||||||||   ||||||||||| |||||||||||||||||| |||||||  |||||||||||||    
T  19375461 tgcttttggagatgagaattgattttgagaagcttaaccaaacacgttggaattgcaagttttcacttttgaagctaccagaagtgtttttaagaggtgt 19375560  T
Q  222 aga 224  Q
    |||    
T  19375561 aga 19375563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 40979570 - 40979361
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||| |    
T  40979570 aaagggcaataaaggagaataataggttgtaataatcaaaatataaaatttattggagaattgattatagctaactcaaaagctaggaattgtagcttca 40979471  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtactttta 213  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||  ||||||||||| |||||||||||||||||| || |||| ||||||    
T  40979470 tccagaattgcttttggagatgagaattgattttgataagctgaaccaaacatgttggaattgcaagttttcacttttgaagcta-cataagtgctttta 40979372  T
Q  214 agaggtgtaga 224  Q
    |||||||||||    
T  40979371 agaggtgtaga 40979361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 2526434 - 2526319
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||| |||||||| |    
T  2526434 aaaggacaataaaggaaaataatgggttgtaataatcaaaatataaaa-ttaatggagaattgattctagttaactcaaaagctaggaattgtagcttca 2526336  T
Q  114 tccagaattgcttttgg 130  Q
    |||||||||||||||||    
T  2526335 tccagaattgcttttgg 2526319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 53614 - 53730
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| ||||||||  |||||||||||||||||||| ||||||||||||||||| || |||||||| ||| |||| ||||||||||||| |||||||| |    
T  53614 aaagggcaataaagagaaataataggttgtaataattaaaatataaaatttattggataattgattatagttaacccaaaagctaggaattgtagcttca 53713  T
Q  114 tccagaattgcttttgg 130  Q
     ||| ||||||||||||    
T  53714 accataattgcttttgg 53730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 33082857 - 33082984
Alignment:
Q  19 gacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagctttatcca 117  Q
    |||||||||| |||||||| |||||||||||| |||||||||||||   | ||||||||||||||| ||||||||||| | ||||| ||||||||| |||    
T  33082857 gacaataaagaaaaataattggttgtaataattaaaatataaaattagatggagaattgattctagttaactcaaaagtttggaatggtagctttaacca 33082956  T
Q  118 gaattgcttttggtgatgagaattgatt 145  Q
    |||||  ||||||  | |||||||||||    
T  33082957 gaattaattttggaaaagagaattgatt 33082984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 33387644 - 33387759
Alignment:
Q  16 aaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttat 114  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||||||||| | ||||||||||| | |  |||||||||| |||||| |||||||| |     
T  33387644 aaggacgataaaggaaaataatgggttgtaataattaaaatataaaatttaatggagaattgattatggtcaactcaaaagttaggaattgtagcttcaa 33387743  T
Q  115 ccagaattgcttttgg 130  Q
    ||||||||| ||||||    
T  33387744 ccagaattgtttttgg 33387759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 11018376 - 11018444
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattcta 83  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |  | |||||||||||    
T  11018376 aaaggacaataaaggaaaataataggttctaataattaaaatataaaatttaatgtataattgattcta 11018444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 41040083 - 41040170
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctagga 102  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |||||||||    |||||||||||| || ||  ||||||||||||    
T  41040083 aaagggcaataaagaaaaataataggttgtaataatcaaaatttaaaatttaacgtagaattgattcttgaaaagccaaaagctagga 41040170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 41742169 - 41742239
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| |||||||| ||||||||||||||||| |||||||||| |||||||| |  |||||||||||||||    
T  41742169 aaagggcaataaagaaaaataataggttgtaacaatcaaaatagaaaatttaatgtagaattgattctaga 41742239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 31905581 - 31905530
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaattta 66  Q
    ||||| ||||||||||||||||||| || |||||||||||||| ||||||||    
T  31905581 aaagggcaataaaggaaaataatagattttaataatcaaaatagaaaattta 31905530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 8958457 - 8958519
Alignment:
Q  22 aataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctag 84  Q
    ||||||| ||||||||||||||| ||||||||||| | ||||||| |  ||||||||||||||    
T  8958457 aataaagaaaaataataggttgttataatcaaaattttaaatttagtgtagaattgattctag 8958519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 19356652 - 19356582
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| |||||| | |||||||||| |||||||||| |||||| |||||||| |  |||||||||||||||    
T  19356652 aaagggcaataatgaaaaataatagattgtaataataaaaatagaaaatttaatgtagaattgattctaga 19356582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 44002790 - 44002588
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagctttatccagaat 121  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  44002790 ataaagaaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccagaat 44002691  T
Q  122 tgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtacttttaagaggtgt 221  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||| ||||||| |||||||||| |||    
T  44002690 tgcttttagagatgagaattgattttgagaagctgaaccaaacatgttggaattgcaagttttcacttttgaagctaccagaagtgcttttaagagttgt 44002591  T
Q  222 aga 224  Q
    |||    
T  44002590 aga 44002588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 19860404 - 19860224
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||| || ||| |||| ||| |    
T  19860404 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaattttattggagaattgattatagttaactcaaaagttaagaattgtaacttca 19860305  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaa 194  Q
     | | |||||||||| | |||||||||||||||||||||| ||||||||||||  |||||| |  | ||||||||||||||    
T  19860304 cctaaaattgcttttagagatgagaattgattttgagaagttaaaccaaacatgttggaatcgttagttttcacttttgaa 19860224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 206
Target Start/End: Complemental strand, 37551684 - 37551516
Alignment:
Q  40 gttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaattgcttttggtgatgaga 138  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| ||||||| || ||||||| |||||||| | ||||||||||||||||  ||||||    
T  37551684 gttgtaataatcaaaatacaaaatttattggagaattgattctagttaactcagaaactaggaattgtagcttcaaccagaattgcttttggatatgaga 37551585  T
Q  139 attgattttgag-aagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagt 206  Q
    |||||||||||| ||| ||||||||||||| ||||||| | | |||||||||||||||||| |||||||    
T  37551584 attgattttgagaaagttaaaccaaacatattggaattactagttttcacttttgaagctaccagaagt 37551516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 43695114 - 43694963
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    |||||||||||||||||| |||| |||  ||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||| |||||||| |    
T  43695114 aaaggacaataaaggaaa-taatgggtaataataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattgtagcttca 43695016  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacat 166  Q
     ||||||||| ||||   || |||||||| |||||  ||||| ||||||||||    
T  43695015 gccagaattgtttttacagaagagaattgcttttgtaaagctgaaccaaacat 43694963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 7473669 - 7473602
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattct 82  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  7473669 aaaggacaataaaagaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattct 7473602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 17480965 - 17480895
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||    
T  17480965 aaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctaga 17480895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 43342224 - 43342294
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||    
T  43342224 aaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctaga 43342294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 35458132 - 35458202
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |||||||| |  |||||||||||||||    
T  35458132 aaagggcaataaagaaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctaga 35458202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 37640708 - 37640777
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctag 84  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |  ||||||||||||||    
T  37640708 aaagggcaataaaggaaaataatatgttgtgataatcaaaatataaaatttaatgtagaattgattctag 37640777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 3738995 - 3739063
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattcta 83  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |  |||||||||||||    
T  3738995 aaagggcaataaagaaaaataataggttgtaataatcaaaatattaaatttaatgtagaattgattcta 3739063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 37996863 - 37996770
Alignment:
Q  21 caataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||||| |||||||||| |||||||||||||| |||||||||||| |  ||||||||||| ||  ||  |||||| |||||| ||||||||||    
T  37996863 caataaatgaaaataatatgttgtaataatcaagatataaaatttaatgtagaattgattcaaggaaagccaaaagttaggaattgtagcttta 37996770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 32497162 - 32497222
Alignment:
Q  21 caataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattc 81  Q
    |||||||||||||||||||||| |||||||  |||||||||||||| |  |||||||||||    
T  32497162 caataaaggaaaataataggttataataattcaaatataaaatttaatgtagaattgattc 32497222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 50392773 - 50392977
Alignment:
Q  21 caataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagctttatccaga 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||| |||| || |||||||    
T  50392773 caataaaggaaaataataggttgtaataataaaaatataaaatttattagagaatttattctagctaacttaaaagctaggaattgtagtttcatccaga 50392872  T
Q  120 attgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtacttttaagaggt 219  Q
    ||| ||||||| |||||||||||||||||||||| | ||||||||||   |||||||||| ||||||||||| |||||| ||||||| ||||||||||||    
T  50392873 attacttttggagatgagaattgattttgagaagttgaaccaaacatgtcggaattgcaagttttcacttttaaagctaccagaagtgcttttaagaggt 50392972  T
Q  220 gtaga 224  Q
     ||||    
T  50392973 ataga 50392977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 30809916 - 30809752
Alignment:
Q  59 aaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagctttatccagaattgcttttggtgatgagaattgattttgagaagctaa 157  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||||| |    
T  30809916 aaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggagatgagagttgattttgagaagctga 30809817  T
Q  158 accaaacatactggaattgcaaattttcacttttgaagctatcagaagtacttttaagaggtgta 222  Q
    |||||||||  |||||||| || |||||||||||||||||||||||||| ||||| |||||||||    
T  30809816 accaaacatgttggaattggaagttttcacttttgaagctatcagaagtgcttttgagaggtgta 30809752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 45489058 - 45489238
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||| |||||| |||| |||||| |||||||| |    
T  45489058 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaattttattggaaaattgattctagttaactccaaagttaggaattgtagcttca 45489157  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaa 194  Q
     | |||||||||||| | |||||||||||||||||||||| ||||||||||||  |||||| |  | ||||||||||||||    
T  45489158 cctagaattgcttttagagatgagaattgattttgagaagttaaaccaaacatgttggaatcgttagttttcacttttgaa 45489238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 44610772 - 44610961
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagcttta 113  Q
    |||||||||||||| |||||||| |||||||||||| ||||||||||||||| | ||||||||||||||   |||||||||||||| ||| ||||||| |    
T  44610772 aaaggacaataaagaaaaataat-ggttgtaataattaaaatataaaatttaatggagaattgattctaataaactcaaaagctagaaattgtagcttca 44610870  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaa 204  Q
     |||||||||||||||| ||||||||||||||||| |||||| ||||||||||  ||||||||| | |||||||||||||| ||| |||||    
T  44610871 accagaattgcttttggagatgagaattgattttgtgaagctgaaccaaacatgttggaattgctagttttcacttttgaaactaccagaa 44610961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 28883841 - 28883689
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||||| ||||||||||||||| |||  ||||||||||||||||||||||| | ||||||||||||||  |||||||||||||| ||| |||||||| |    
T  28883841 aaaggacgataaaggaaaataatgggtaataataatcaaaatataaaatttaatggagaattgattctatttaactcaaaagctaagaattgtagcttca 28883742  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacat 166  Q
      |||||||||||||    | |||||||| |||||  ||||| ||||||||||    
T  28883741 gtcagaattgcttttacaaaagagaattgtttttgtaaagctgaaccaaacat 28883689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 42074543 - 42074427
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||| ||  || |||||||||||||| ||||||||||    
T  42074543 aaagggcaataaaggaaaataataggttgtaataatcaaaatattaaatttaatgtagaattgattcgagcaaagtcaaaagctaggaattgtagcttta 42074444  T
Q  114 tccagaattgcttttgg 130  Q
       ||||||| ||||||    
T  42074443 aggagaattgtttttgg 42074427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 53687324 - 53687440
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |  |||||||||| |||| ||  ||||| ||||||| ||||||||||    
T  53687324 aaagggcaataaagaaaaataataggttgtaataatcaaaatattaaatttagtgtagaattgattttagaaaagccaaaacctaggaattgtagcttta 53687423  T
Q  114 tccagaattgcttttgg 130  Q
     | ||||||||||||||    
T  53687424 acaagaattgcttttgg 53687440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 11263842 - 11263755
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctagga 102  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||  ||  ||||||||||||    
T  11263842 aaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatttaatctagaattgattctaggaaagccaaaagctagga 11263755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 40237442 - 40237334
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaat 121  Q
    ||||||||||||||| | |||||||||||||||||||||||||  | ||||||||||||||| ||| | ||||| |||||| |||| ||| ||||| |||    
T  40237442 ataaaggaaaataatggattgtaataatcaaaatataaaatttgatggagaattgattctagttaatttaaaagttaggaattgtaacttcatccaaaat 40237343  T
Q  122 tgcttttgg 130  Q
    |||||||||    
T  40237342 tgcttttgg 40237334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 48181220 - 48181104
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| |||||||| |||||||||||||| |||||||||||||||||||||| |  ||||||||||||||  ||  ||||||||||||| ||||| ||||    
T  48181220 aaagggcaataaagaaaaataataggttgcaataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaagctaggaattgtagtttta 48181121  T
Q  114 tccagaattgcttttgg 130  Q
       ||||||||||||||    
T  48181120 aggagaattgcttttgg 48181104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 51407615 - 51407499
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||| ||| ||||  |||| |||| || |||||||| |    
T  51407615 aaagggcaataaaggaaaataataagttgtaataattaaaatataatatttattggagaattgattttagttaaccaaaaaactagaaattgtagcttca 51407516  T
Q  114 tccagaattgcttttgg 130  Q
     ||| ||||||||||||    
T  51407515 accaaaattgcttttgg 51407499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 45150749 - 45150662
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctagga 102  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |  ||||||||||||||  ||  ||||||||||||    
T  45150749 aaagggcaataaaggaaaataataggttgtaacaatcaaaatataaaatttaatgtagaattgattctaggaaaaccaaaagctagga 45150662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 44328803 - 44328682
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    |||||| ||||||||||||||||  |||||||| || |||||||||       | ||||||||||||||| |||||||||||||||||| |||||||| |    
T  44328803 aaaggataataaaggaaaataatgagttgtaatgattaaaatataa-------tggagaattgattctagttaactcaaaagctaggaattgtagcttca 44328711  T
Q  114 tccagaattgcttttggtgatgagaattg 142  Q
     ||| |||||||||||| || ||||||||    
T  44328710 gccaaaattgcttttggagaagagaattg 44328682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 48254451 - 48254521
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |||||||| |  |||||||||||||||    
T  48254451 aaagggcaataaagaaaaataataggttgtaataatcaaaatagaaaatttaatatagaattgattctaga 48254521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 28182521 - 28182456
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgatt 80  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  28182521 aaagggcaataaaagaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgatt 28182456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 51229870 - 51229779
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||  ||  |||||| |||||| ||||||||||    
T  51229870 ataaaagaaaataataggttgtaataatcaaaatattaaatttaatgtagaattgattctaggaaagccaaaagttaggaattgtagcttta 51229779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 30810859 - 30810813
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaa 61  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  30810859 aaagggcaataaaggaaaataataggttgtaataatcaaaatataaa 30810813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 39251627 - 39251559
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattcta 83  Q
    ||||| |||||||| ||||||||| |||||||||||||||||| |||||||| |  |||||||||||||    
T  39251627 aaagggcaataaagaaaaataatatgttgtaataatcaaaatagaaaatttaatgtagaattgattcta 39251559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 33025754 - 33025861
Alignment:
Q  24 taaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaatt 122  Q
    |||||||||||||||| |||||||||| ||||||| ||||||  |  |||||||||| |||  ||  ||||||||||||| ||||||||||   ||||||    
T  33025754 taaaggaaaataatagtttgtaataattaaaatattaaattttatgtagaattgattataggaaagccaaaagctaggaattgtagctttaaggagaatt 33025853  T
Q  123 gcttttgg 130  Q
    ||||||||    
T  33025854 gcttttgg 33025861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 42274662 - 42274553
Alignment:
Q  21 caataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccaga 119  Q
    ||||||||||||||||||| |||| |||| |||| || |||||||| |  |||||||||||||   ||  ||||||||||||| |||| |||||   |||    
T  42274662 caataaaggaaaataatagattgttataaccaaatta-aaaatttaatgtagaattgattctatgaaagccaaaagctaggaattgtaactttaaggaga 42274564  T
Q  120 attgcttttgg 130  Q
    |||||||||||    
T  42274563 attgcttttgg 42274553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 2025664 - 2025486
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| ||||||| |||||||| |    
T  2025664 aaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatatattggagaattgattctagctaactcaaaaactaggaattgtagcttca 2025565  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttg 192  Q
    |||| |||||||||||| |||||||||||||||||||||||| ||||||||||  || |||||||| ||||||||||||    
T  2025564 tccaaaattgcttttggagatgagaattgattttgagaagctgaaccaaacatgttgaaattgcaagttttcacttttg 2025486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 3590224 - 3590073
Alignment:
Q  16 aaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttat 114  Q
    |||||||||||| |||||||||  ||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||| |||||| |||||||| |     
T  3590224 aaggacaataaaagaaaataatttgttgtaataattaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattgtagcttcaa 3590125  T
Q  115 ccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacat 166  Q
    ||||||||| |||||| || |||||||| || ||  ||||| ||||||||||    
T  3590124 ccagaattgtttttggagaagagaattgcttctgtaaagctgaaccaaacat 3590073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 35802291 - 35802388
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctagga-atgtagctt 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||  ||  |||||||||||| |||||||||    
T  35802291 aaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaagctaggatatgtagctt 35802388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 924252 - 924136
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||   ||||||||||||| |||  |||||| |||||| ||||||||||    
T  924252 aaagggcaataaagaaaaataataggttgtaataatcaaaatataaaatatattgacgaattgattctagttaaaccaaaagttaggaattgtagcttta 924153  T
Q  114 tccagaattgcttttgg 130  Q
     | |||||| |||||||    
T  924152 actagaattacttttgg 924136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 13015830 - 13015732
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttt 112  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||| |  |||||||||||| | ||||||||||| |||||| |||||||||    
T  13015830 aaaggacaataaaggaaaataacgagttgtaataatcaaaatataaaatttaatgtagaattgattctcgttaactcaaaagttaggaattgtagcttt 13015732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 33165943 - 33165872
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatc-aaaatataaaatttatttgagaattgattctaga 85  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  33165943 aaaggacaataaaggaaaataatgggttgtaataatcaaaaatataaaatttaatggagaattgattctaga 33165872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 8416813 - 8416743
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| |||||||||||||||||| |||||||||||||||||| |||||||| |  |||||||||||||||    
T  8416813 aaagggcaataaaggaaaataataagttgtaataatcaaaatagaaaatttaatgtagaattgattctaga 8416743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 22936517 - 22936587
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |  |||||||||||||||    
T  22936517 aaaggccaataaaggaaaataataggttgtaataatcgaaatagaaaatttaatgtagaattgattctaga 22936587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 45276350 - 45276420
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||    
T  45276350 aaagggcaacaaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctaga 45276420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 7636538 - 7636409
Alignment:
Q  70 gagaattgattctagataactcaaaagctaggaatg-tagctttatccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatac 168  Q
    ||||||||||| ||  |||||||||| ||||||||  |||||| | | |||||||||||| | |||||||||||||||||| || || || |||||||      
T  7636538 gagaattgattttacttaactcaaaatctaggaattatagcttcaacaagaattgcttttagagatgagaattgattttgaaaatctgaatcaaacatgt 7636439  T
Q  169 tggaattgcaaattttcacttttgaagcta 198  Q
    ||||||||| | ||||||||||||| ||||    
T  7636438 tggaattgctagttttcacttttgaggcta 7636409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 36821581 - 36821625
Alignment:
Q  22 aataaaggaaaataataggttgtaataatcaaaatataaaattta 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36821581 aataaaggaaaataataggttgtaataatcaaaatataaaattta 36821625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 35164328 - 35164444
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| ||||||| |||||||||| ||||||||||| ||||||| ||||||| |  ||||||||||| ||  || |||||| ||||||| |||||||| |    
T  35164328 aaagggcaataaaagaaaataataagttgtaataattaaaatattaaatttaatgtagaattgattcgaggaaagtcaaaaactaggaattgtagcttca 35164427  T
Q  114 tccagaattgcttttgg 130  Q
       ||||||||||||||    
T  35164428 aggagaattgcttttgg 35164444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 37684165 - 37684237
Alignment:
Q  32 aataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat 104  Q
    |||||| ||||||||||| ||||||| |||||||| |  || |||||||||||  |||||||||| |||||||    
T  37684165 aataatgggttgtaataaccaaaatacaaaatttaatccagcattgattctagtcaactcaaaagttaggaat 37684237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 3850812 - 3850996
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |    
T  3850812 aaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagataactcaaaagctagaaattgtagcttca 3850911  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagcta 198  Q
    | || |||||| ||||| |||||||||||||||||||||||| |||||||||   || |||||||| |||| |||||||||||||    
T  3850912 ttcataattgcctttggagatgagaattgattttgagaagctgaaccaaacaggttgaaattgcaagtttttacttttgaagcta 3850996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 41512295 - 41512085
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||||||| |||||| |||||||| |    
T  41512295 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttattggagaaatgattatagctaactcaaaagttaggaattgtagcttca 41512196  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtactttta 213  Q
    || | || |  |||||| |||||||||||||||||||||||| ||||||| ||  ||||||||||| ||||||||||||||||||  | ||||  |||||    
T  41512195 tcgaaaaatatttttggagatgagaattgattttgagaagctgaaccaaagatgttggaattgcaagttttcacttttgaagctacgaaaagtgttttta 41512096  T
Q  214 agaggtgtaga 224  Q
    ||| |||||||    
T  41512095 agatgtgtaga 41512085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 24075673 - 24075475
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||||| ||||||||||    
T  24075673 aaagggcaataaatgaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagttaaatcaaaagttaggaattgtagcttta 24075574  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtactttt 212  Q
    ||||||||| ||||||  ||||||||| |||||| | ||| | ||||||||||  || |||||||| ||||||||||| || ||| ||||| |||||||    
T  24075573 tccagaattacttttgaagatgagaatcgattttaaaaagttgaaccaaacatgttgaaattgcaagttttcacttttaaaactaccagaaatactttt 24075475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 42137654 - 42137851
Alignment:
Q  21 caataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccaga 119  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||            
T  42137654 caataaatgaaaataataagttgtaataataaaaatataaaatttattggagaattgattctagttaactcaaaagctaggaattgtagatt-------c 42137746  T
Q  120 attgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtacttttaagaggt 219  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| ||  ||||||||| ||||||||||||||||||||||  |||| |||||||  |||    
T  42137747 attgcttttggagatgagaattgattttgagaaactaaaccaaatatgttggaattgctaattttcacttttgaagctatcgaaagtgcttttaaagggt 42137846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 11829228 - 11829112
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||| | ||||||||||||||| ||||||||||| |||||| | || ||| |    
T  11829228 aaaggacaataaaggaaaataatgggttgtaataactaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattataccttca 11829129  T
Q  114 tccagaattgcttttgg 130  Q
    |||||||||||||||||    
T  11829128 tccagaattgcttttgg 11829112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 1762369 - 1762219
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    |||||||||||||||||||||||  | ||||| ||| ||| ||||||||||| | |||||||||||||||  |||| ||||| |||||| |||||||| |    
T  1762369 aaaggacaataaaggaaaataatgagctgtaaaaattaaattataaaatttaatagagaattgattctagtaaacttaaaagttaggaattgtagcttca 1762270  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagct-aaaccaaa 163  Q
     |||||||||||||||| ||| | |||||||||||||||||| ||||||||    
T  1762269 accagaattgcttttggagattaaaattgattttgagaagctgaaaccaaa 1762219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 31100414 - 31100527
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||||| |||||||||| |||| ||| |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||||| |    
T  31100414 aaaggaccataaaggaaa-taatgggtagtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattgtagcttca 31100512  T
Q  114 tccagaattgctttt 128  Q
     |||||||| |||||    
T  31100513 gccagaattactttt 31100527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 46033630 - 46033716
Alignment:
Q  21 caataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaatgta 107  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||| | ||||||||    
T  46033630 caataaaggaaaataatatgttgtaataatcaaaatatacaatttattggagaattgattctaattaactcaaaagttgggaatgta 46033716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 11051116 - 11051198
Alignment:
Q  22 aataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat 104  Q
    |||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||| | || |||||| |||||||    
T  11051116 aataaaggaaaataataatttgtaataatcaaaatataaaatttaatggagaattgattctagtttacccaaaagttaggaat 11051198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 13509887 - 13509957
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||    
T  13509887 aaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctaga 13509957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 47655835 - 47655951
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctagga-atgtagcttta 113  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||||||| |  ||||||||||||||| || | | |||||||||  ||||||||||    
T  47655835 aaagggcaataaaggaaaataataggttgtaatagtcaaaatagaaaatttaatgtagaattgattctagaaaagttagaagctaggatttgtagcttta 47655934  T
Q  114 tccagaattgcttttgg 130  Q
       | ||||||||||||    
T  47655935 aggataattgcttttgg 47655951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 27416715 - 27416627
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat 104  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||| ||| |||| ||||| ||| ||||    
T  27416715 aaagggcaataaaggaaaataatagattgtaataatc-aaatataaaagttattggagaattgattatagttaacccaaaaactaagaat 27416627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 50030979 - 50030928
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaattta 66  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  50030979 aaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaattta 50030928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 6706283 - 6706213
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| ||||||||||||||||||||||||||||||  ||||| |||||||| |  |||||||||||||||    
T  6706283 aaagggcaataaaggaaaataataggttgtaataattgaaatagaaaatttaatgtagaattgattctaga 6706213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 49430784 - 49430716
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattcta 83  Q
    ||||| ||||||| ||||||||||  |||||||||| ||||||||||||||||| ||||||||| ||||    
T  49430784 aaagggcaataaaagaaaataataaattgtaataataaaaatataaaatttattggagaattgaatcta 49430716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 7385368 - 7385307
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctag 84  Q
    |||||| |||||||||||||||||||||||||||| |||||||| |  | ||||||||||||    
T  7385368 ataaagtaaaataataggttgtaataatcaaaataaaaaatttaatgtaaaattgattctag 7385307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 11051051 - 11051108
Alignment:
Q  22 aataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgat 79  Q
    |||||||||||||||||  || ||||||||||||||||||||||| | ||||||||||    
T  11051051 aataaaggaaaataataatttataataatcaaaatataaaatttaatggagaattgat 11051108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 27065144 - 27065024
Alignment:
Q  47 taatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaattgcttttggtgatgagaattgatt 145  Q
    |||| ||||||||||||||| | ||||||||||| ||| |||||||||| ||||||| |||||||| |  || ||| |||||||  || |||||||| ||    
T  27065144 taattaaaatataaaatttaatggagaattgattttagttaactcaaaaactaggaattgtagcttcagtcaaaatcgcttttgaagaagagaattgctt 27065045  T
Q  146 ttgagaagctaaaccaaacat 166  Q
    ||   ||||| ||||||||||    
T  27065044 ttataaagctgaaccaaacat 27065024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 44740284 - 44740228
Alignment:
Q  27 aggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattcta 83  Q
    |||||||||||||||||||||||| |||||||||||||||    |||||||||||||    
T  44740284 aggaaaataataggttgtaataatgaaaatataaaatttaacgtagaattgattcta 44740228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 45179482 - 45179418
Alignment:
Q  16 aaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgatt 80  Q
    |||||||| ||||||||||||  |||| ||||||| ||||||||||||||  |||||||||||||    
T  45179482 aaggacaacaaaggaaaataacgggttctaataattaaaatataaaatttgattgagaattgatt 45179418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 4485128 - 4485175
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaa 62  Q
    ||||| |||||||| |||||||||||| ||||||||||||||| ||||    
T  4485128 aaagggcaataaagaaaaataataggtcgtaataatcaaaataaaaaa 4485175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 27067286 - 27067246
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaa 55  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  27067286 aaaggacaataaaggaaaataatggattgtaataattaaaa 27067246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 9641 - 9831
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||| |    
T  9641 aaagggcaataaagaaaaataatagattgtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagttaggaattgtagcttca 9740  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaa 204  Q
    |||||||||| |||||  |||||||||||||||||||||||| ||||||||||  |||||||| || |||||||||||||| ||| |||||    
T  9741 tccagaattgtttttgaagatgagaattgattttgagaagctgaaccaaacatgttggaattgtaagttttcacttttgaaactaccagaa 9831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 20838448 - 20838642
Alignment:
Q  21 caataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagctttatccaga 119  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||||| |||  |||||||||| ||||| | ||||||| | |||||    
T  20838448 caataaaggaaactaataggtcgtaataatcaaaatataagatttattggagaattgattatagtaaactcaaaagttaggatttgtagcttcaaccaga 20838547  T
Q  120 attgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtacttttaa 214  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||| | ||||||||||||||| ||| |||| | |||||||    
T  20838548 attgcttttggagatgagaattgattttgagaagctgaaccaaacatgttggaattgctagttttcacttttgaagttatgagaattgcttttaa 20838642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 30134297 - 30134146
Alignment:
Q  16 aaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttat 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| | ||||||||||||||| || |||||||| |     
T  30134297 aaggacaataaaggaaaataataggttgtaataattaaaatataaaatttaatggagaattgattctggttaactcaaaagctagaaattgtagcttcaa 30134198  T
Q  115 ccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacat 166  Q
    |||||||||||||||| || |||||||| |||||  ||||| ||||||||||    
T  30134197 ccagaattgcttttggagaagagaattgcttttgtaaagctgaaccaaacat 30134146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 4146962 - 4146847
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||| |||||||| |    
T  4146962 aaaggacaataaaggaaaataatgggttgtaataatcaaaatataaaa-ttaatggagaattgattctagttaactcaaaagctaggaattgtagcttca 4146864  T
Q  114 tccagaattgcttttgg 130  Q
    |||||||||||||||||    
T  4146863 tccagaattgcttttgg 4146847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 10683310 - 10683248
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||    
T  10683310 ataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctaga 10683248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 27825119 - 27825042
Alignment:
Q  71 agaattgattctagataactcaaaagctaggaa-tgtagctttatccagaattgcttttggtgatgagaattgatttt 147  Q
    |||||||||||||| ||||| ||||| |||||| |||||||| | ||| |||||||||||| || |||||||| ||||    
T  27825119 agaattgattctagttaactgaaaagttaggaattgtagcttcaaccataattgcttttggagaagagaattgctttt 27825042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 298608 - 298797
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagcttta 113  Q
    |||| |||||||| ||||||||| |||||||||||| ||||||||||||||| | |||||||||||||||  |||| |||||||| |||| ||||||| |    
T  298608 aaagaacaataaatgaaaataat-ggttgtaataattaaaatataaaatttaatggagaattgattctagtaaacttaaaagctaagaattgtagcttca 298706  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaa 204  Q
      || |||||||||| |  ||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||| |||||| |||||    
T  298707 atcaaaattgcttttagaaatgagaattgattttgagaagctgaaccaaacatattgaaattgctaattttcacttttaaagctaccagaa 298797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 47085636 - 47085820
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat-gtagcttta 113  Q
    |||||||||||||| ||||||||  ||||||||||| |||||||||| || | | ||||||| |||||||  |||||||||| ||||||| ||| ||| |    
T  47085636 aaaggacaataaagaaaaataatgagttgtaataattaaaatataaatttcaatggagaattaattctagtaaactcaaaagttaggaattgtaacttca 47085735  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagcta 198  Q
     ||| |||||||||| | ||| ||||||||||||||||||||||| |||||||  || |||||| ||||||||||||||||||||    
T  47085736 accaaaattgcttttagagattagaattgattttgagaagctaaatcaaacatgttgaaattgctaattttcacttttgaagcta 47085820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 32450902 - 32450749
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttta 113  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| || |||||||| |    
T  32450902 aaaggacagtaaagaaaaataatgggttgtaataatcaaaatataaaatttattggagaattgattctagttaactcaaaagttagaaattgtagcttca 32450803  T
Q  114 tccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacata 167  Q
     ||| |||||||||||| || |||||||| |||||  ||| | |||||||||||    
T  32450802 accaaaattgcttttggagaagagaattgcttttgtaaagttgaaccaaacata 32450749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 204
Target Start/End: Complemental strand, 19544645 - 19544500
Alignment:
Q  60 aaatttatttgagaattgattctagataactcaaaagctaggaat-gtagctttatccagaattgcttttggtgatgagaattgattttgagaagctaaa 158  Q
    ||||||| | |||||||||||||||  ||||||||||||| |||| ||||||| | ||| |||| ||||||| |||||||||||||||||||||||| ||    
T  19544645 aaatttaatggagaattgattctagtaaactcaaaagctatgaattgtagcttcaaccataattacttttggagatgagaattgattttgagaagctgaa 19544546  T
Q  159 ccaaacatactggaattgcaaattttcacttttgaagctatcagaa 204  Q
    ||||||||  ||||||||| | |||||||||||||||||| |||||    
T  19544545 ccaaacatgttggaattgctagttttcacttttgaagctaccagaa 19544500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 39857220 - 39857112
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaat 121  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||| |||||||| |||||||||    
T  39857220 ataaaggaaaataatgggttgtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctatgaattgtagcttcatccagaat 39857121  T
Q  122 tgcttttgg 130  Q
    | |||||||    
T  39857120 tacttttgg 39857112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 47158170 - 47158383
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga---taactcaaaagctaggaat-gtagct 110  Q
    ||||| |||||||| |||||||||| || ||||||| ||||||||||||||| | ||||||||||| ||     ||| ||||||| || |||| ||||||    
T  47158170 aaagggcaataaagaaaaataatagattataataataaaaatataaaatttaatggagaattgattataatatttaattcaaaagttatgaattgtagct 47158269  T
Q  111 ttatccagaattgcttttggtgatgagaattgattttgagaagctaaaccaaacatactggaattgcaaattttcacttttgaagctatcagaagtactt 210  Q
    | | ||| |||||||||||| |||||||||||||||||||||| |||||||||| |  ||||||||| | ||||||||||||| |||| || || | |||    
T  47158270 tcacccaaaattgcttttggagatgagaattgattttgagaagttaaaccaaacctgttggaattgctagttttcacttttgatgctaccaaaaatgctt 47158369  T
Q  211 ttaagaggtgtaga 224  Q
    ||||  ||||||||    
T  47158370 ttaaatggtgtaga 47158383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 2000115 - 2000230
Alignment:
Q  14 caaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagcttt 112  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||| |||||| ||||||||     
T  2000115 caaaggataataaaggaaaataatgggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattgtagcttc 2000213  T
Q  113 atccagaattgcttttg 129  Q
    | ||||||||| |||||    
T  2000214 aaccagaattgtttttg 2000230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 25970578 - 25970468
Alignment:
Q  21 caataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccaga 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||   ||  ||||||||||||| ||||||||||   |||    
T  25970578 caataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattctaagaaagccaaaagctaggaattgtagctttaaagaga 25970479  T
Q  120 attgcttttgg 130  Q
    ||| |||||||    
T  25970478 attacttttgg 25970468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 45202622 - 45202538
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagcta 99  Q
    |||| ||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||  ||||||||    
T  45202622 aaagaacaataaagaaaaataatagattgtaataattaaaatataaaatttattggagaattgattctagttaacctaaaagcta 45202538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 43664767 - 43664830
Alignment:
Q  21 caataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctag 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  43664767 caataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattctag 43664830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 25472712 - 25472782
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||    
T  25472712 aaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctaga 25472782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 26827710 - 26827779
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctag 84  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||| |  ||||||||||||||    
T  26827710 aaaggacaataaagaaaaataatagattgtaataatcaaaatataaaatttaatgtagaattgattctag 26827779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 15000012 - 14999950
Alignment:
Q  22 aataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctag 84  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |  ||||||||||||||    
T  15000012 aataaaggaaaataatagattgtaataatcaaaatataaaatttaatgtagaattgattctag 14999950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 37371230 - 37371160
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| |||||||||||||| ||| |||||||||||||||||| |||||||| |  |||||||||||||||    
T  37371230 aaagggcaataaaggaaaatcataagttgtaataatcaaaatagaaaatttaatgtagaattgattctaga 37371160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 30825341 - 30825252
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaat 104  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||| ||||||| |  |||||||||||| |  ||  ||||||||||||||    
T  30825341 aaagggcaataaagaaaaataataggttgtaataattaaaatattaaatttaatgtagaattgattcttggaaagccaaaagctaggaat 30825252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 30139776 - 30139844
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattcta 83  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||||||    |||||||||||||    
T  30139776 aaagggcaataaaggaaaataataggttataataatcaaaatagaaaatttaacgtagaattgattcta 30139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 26826525 - 26826468
Alignment:
Q  23 ataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgatt 80  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| |  ||||||||||    
T  26826525 ataaaggaaaataataggttgtaataagcaaaatataaattttaatgtagaattgatt 26826468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 47238917 - 47239004
Alignment:
Q  16 aaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa 103  Q
    |||| |||| ||| |||||||  |||||||| || |||||||||||||||| |  |||||||||||||  ||||||||||| ||||||    
T  47238917 aagggcaattaagaaaaataaccggttgtaacaaccaaaatataaaatttaatgcagaattgattctaactaactcaaaagttaggaa 47239004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 25191809 - 25191854
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataa 60  Q
    ||||||||||||| |||||||||  ||||| |||||||||||||||    
T  25191809 aaaggacaataaaagaaaataatgagttgttataatcaaaatataa 25191854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 41064704 - 41064644
Alignment:
Q  71 agaattgattctagataactcaaaagctaggaa-tgtagctttatccagaattgcttttgg 130  Q
    ||||||||||||||| || ||| |||||||||| |||||||||||  ||||||| ||||||    
T  41064704 agaattgattctagaaaagtcagaagctaggaattgtagctttatggagaattgtttttgg 41064644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 33009 - 33079
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  33009 aaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatttaatttagaattgattctaga 33079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 37846 - 37776
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  37846 aaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatttagaattgattctaga 37776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 4524 - 4661
Alignment:
Q  28 ggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaattgctt 126  Q
    ||||||||||  ||| |||||| ||||||| |||||||| |  | |||||||| ||| |||||||||||||||||| |||||||| |  ||||||| |||    
T  4524 ggaaaataatgagttataataaccaaaatagaaaatttaatgcataattgattgtagttaactcaaaagctaggaattgtagcttcaatcagaattactt 4623  T
Q  127 ttggtgatgagaattgattttgagaagctaaaccaaac 164  Q
    |||| | | |||||||||||||||||| ||||||||||    
T  4624 ttggagctaagaattgattttgagaagttaaaccaaac 4661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 3574 - 3437
Alignment:
Q  28 ggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctagataactcaaaagctaggaa-tgtagctttatccagaattgctt 126  Q
    ||||||||||  ||| |||||| ||||||| |||||||| |  | |||||||| ||| |||||||||||||||||| |||||||| |  ||||||| |||    
T  3574 ggaaaataatgagttataataaccaaaatagaaaatttaatgcataattgattgtagttaactcaaaagctaggaattgtagcttcaatcagaattactt 3475  T
Q  127 ttggtgatgagaattgattttgagaagctaaaccaaac 164  Q
    |||| | | |||||||||||||||||| ||||||||||    
T  3474 ttggagctaagaattgattttgagaagttaaaccaaac 3437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 91683 - 91640
Alignment:
Q  19 gacaataaaggaaaataataggttgtaataatcaaaatataaaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  91683 gacaataaaggaaaataataggttgtaataatcaaaatataaaa 91640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 4241 - 4171
Alignment:
Q  15 aaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttatttgagaattgattctaga 85  Q
    ||||| |||||||||||||||||||||||||||||| |||||| |||||||| |  |||||||||| ||||    
T  4241 aaagggcaataaaggaaaataataggttgtaataataaaaatagaaaatttaatgtagaattgattttaga 4171  T

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Target: scaffold0069 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 16947 - 16919
Alignment:
Q  34 taataggttgtaataatcaaaatataaaa 62  Q
    |||||||||||||||||||||||||||||    
T  16947 taataggttgtaataatcaaaatataaaa 16919  T

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