View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10039_high_29 (Length: 239)
Name: NF10039_high_29
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 27193002 - 27192791
Alignment:
| Q |
13 |
caaaggatgttgcatttatataatagatgtttgaatgcaatccaatccaacttgagttaatttacgttggagttcggcgtgcattaattcacacatatct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27193002 |
caaaggatgttgcatttatataatagatgtttgaatgcaatccaatccaacttgagttaatctacgttggagttcggcgtgcattaattcacacatatct |
27192903 |
T |
|
| Q |
113 |
aacatgagcgtgagttacctcatattaagtatattgaacgtgagttaacttacgttaaagttattttcgtcggttcatgtaggtgtaagcaattttctca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27192902 |
aacatgagcgtgagttacctcatattaagtatattgaacgtgagttaatttacgttaaagttattttcgtcggttcatgtaggtgtaagcaattttctca |
27192803 |
T |
|
| Q |
213 |
agtttaagtagt |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27192802 |
agtttaagtagt |
27192791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 1121329 - 1121292
Alignment:
| Q |
152 |
gtgagttaacttacgttaaagttattttcgtcggttca |
189 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1121329 |
gtgagttaacttacgttgaagttattttcgtcggttca |
1121292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University