View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_high_3 (Length: 507)
Name: NF10039_high_3
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 12399184 - 12398755
Alignment:
| Q |
13 |
caaaggcaaatagaaattaagcaaacaactatgatgttactgctatgagcattaggattgaacatgcaaagaatacaagtcaaccaaacatcaaatgtac |
112 |
Q |
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| T |
12399184 |
caaaggcaaagagaaatcaagcaaacaactatgatgttactgctatgagcattaggactgaacatgcaaagaatcaaagacaaccaaatatcaaatgcac |
12399085 |
T |
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| Q |
113 |
cgtcac------tactgaaaggagaagctgttaaagctcaagtgcttaaacaacgtgtagaatgtctgatgtggcttcgcgttagaatgtgagtagcaca |
206 |
Q |
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| T |
12399084 |
cgtcaccgtcactactaaaaggcgaagctgttgaagctcaagtgcttaaacaacgtgcagaatgtctgatgtggcttcgcattagaatgtgagtagcaca |
12398985 |
T |
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| Q |
207 |
aactcgaagagagcgagcaaagagaacgggagaaagggaaactgatattacatttttaaaattggtagtattgat----------------caaagcaca |
290 |
Q |
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| T |
12398984 |
aactcgaagagagcgagcgaagagaacggga--------aactgattttatatttttaaaattggtaatattgattgaatcttttaagcatcaaagcaca |
12398893 |
T |
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| Q |
291 |
taaattgctctaatcatatttcccatatgtgacaaaataaaatgcattatctagaagtttgaacattagccataaacttgtaatgcaatctttacaaatc |
390 |
Q |
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| T |
12398892 |
taaattgttctaatcatatttctcatacgagacaaaataaaatgcatcatctacaagtttgaacatttgccataaacttgtaatgccatctttacaaatc |
12398793 |
T |
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| Q |
391 |
tgaagcaatatcaaaacatcaccaactgcataatttgt |
428 |
Q |
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| T |
12398792 |
cgaagcaatatcaaaacatcaccaactgcataatttgt |
12398755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 470
Target Start/End: Complemental strand, 12398739 - 12398698
Alignment:
| Q |
429 |
acaaatatgagccattggcaatgaaaaataaagtcatctcta |
470 |
Q |
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| T |
12398739 |
acaaatcttagccattggcaatgaaaaataaagtcatctcta |
12398698 |
T |
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