View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_high_31 (Length: 238)
Name: NF10039_high_31
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 45745323 - 45745537
Alignment:
| Q |
1 |
ttgtgcattagaaggatcatgaccaatctcaacagaaacatcaaccactgcccatacaccttctgcatgctgcttacagaaccgaaggattctcacttga |
100 |
Q |
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| T |
45745323 |
ttgtgcattagaaggatcatgaccaatctcaacagaaacatcaaccactgcccatacaccttctgcatgctgcttacagaaccgaaggattctcacttga |
45745422 |
T |
|
| Q |
101 |
cgaaccgggactagtggtgagagcaattgaacctcggtatgcatctgaaattgcataatcctagtaagctccagcaaaccaaagcacattgaagcaaact |
200 |
Q |
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| T |
45745423 |
cgaaccgggactagtggtgagagcaattgaacctcggtatgcatctgaaattgcataatcctagtaagctccagcaaaccaaggcacattgaagcaaact |
45745522 |
T |
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| Q |
201 |
tatatacagcaacag |
215 |
Q |
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||||||||||||||| |
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| T |
45745523 |
tatatacagcaacag |
45745537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 28597475 - 28597512
Alignment:
| Q |
38 |
acatcaaccactgcccatacaccttctgcatgctgctt |
75 |
Q |
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| T |
28597475 |
acatcaaccactgcccataccccttctgcatgttgctt |
28597512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 12325620 - 12325668
Alignment:
| Q |
41 |
tcaaccactgcccatacaccttctgcatgctgcttacagaaccgaagga |
89 |
Q |
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| T |
12325620 |
tcaaccacagcccaaacaccttctgcatgctgcttgcaaaacctaagga |
12325668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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