View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10039_high_36 (Length: 220)
Name: NF10039_high_36
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_high_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 33931641 - 33931819
Alignment:
| Q |
1 |
gaatccattgcttcaatagccatttcagcttctttcaataaaatctcttctcccattattcttagcctttgtcttagctctactggtgaaacctttccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33931641 |
gaatccattgcttcaatagccatttcagcttctttcaataaaatctcttctcccattattcttagcctttgtcttagctctgctggtgaaacctttccat |
33931740 |
T |
|
| Q |
101 |
caccatcttcgtcaaaatatctaagaacatgctcgaatcccgcgttcttcatctcttataatccctgaagagaccaatc |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33931741 |
caccatcttcgtcaaaatatctaagaacatgctcgaatcccgcattcttcatctcttataatccctgaagagaccaatc |
33931819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 33938446 - 33938598
Alignment:
| Q |
1 |
gaatccattgcttcaatagccatttcagcttctttcaataaaatctcttctcccattattcttagcctttgtcttagctctactggtgaaacctttccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33938446 |
gaatccattgcttcaatagccatttcagcttctttcaataaaatctcttctcccattattcttagcctttgtcttagctctgctggtgaaacctttccat |
33938545 |
T |
|
| Q |
101 |
caccatcttcgtcaaaatatctaagaacatgctcgaatcccgcgttcttcatc |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33938546 |
caccatcttcgtcaaaatatctaagaacatgctcgaatcccgcgttcttcatc |
33938598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University