View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_high_40 (Length: 204)
Name: NF10039_high_40
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_high_40 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 2288828 - 2288622
Alignment:
| Q |
1 |
ccctgttttgcgcacaaaaacgatttactcttgttttt-catacaattgttattgtttccttaaatcaacaatgcaagttatggtggctgtggccgtgta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2288828 |
ccctgttttgcgcacaaaaacgatttactcttgttttttcatacgattgttattgtttccttaaatcaacaatgcaagttatggtggctgtggccgtgta |
2288729 |
T |
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| Q |
100 |
aatacgaatacagaaagagaagaaactaaaattggcaattaacaaat--taaggatatatcataattccagttctctaccatgcttgtaaaatctaaaca |
197 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2288728 |
aatacgaatacagaaagagaagaaattaaaattggcaattaacaaattataaggatatatcataattccagttctctaccatgcttgtaaaatctcaaca |
2288629 |
T |
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| Q |
198 |
tcaaatt |
204 |
Q |
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||||||| |
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| T |
2288628 |
tcaaatt |
2288622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2255694 - 2255780
Alignment:
| Q |
1 |
ccctgttttgcgcacaaaaacgatttactcttgtttt-tcatacaattgttattgtttccttaaatcaacaatgcaagttatggtgg |
86 |
Q |
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|||| |||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2255694 |
ccctattttacgcaccaaaacgatccactcttgttttttcatacaattgttattgtttccttaaaccaacaatgcaagttatggtgg |
2255780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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