View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_1 (Length: 619)
Name: NF10039_low_1
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 19 - 609
Target Start/End: Complemental strand, 32815121 - 32814535
Alignment:
| Q |
19 |
gcaaagtggtttgatttatagtatagacagatagaagttcaaaagataattcaaatactttcaattcgttgtggtttcatattatgtgttattgagctat |
118 |
Q |
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| T |
32815121 |
gcaaagtggtttgatttatagtatagacagatagaagttcaaaagataatgcaaatactttcaattcgttgtggtttcatattatgtgttattgagctat |
32815022 |
T |
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| Q |
119 |
gtactttagattgaaggtgtgttcaatgtccaatacatcggtgtttgacatgatcttaaatcatttgttaggtgtctttgatagtgtttcatagttattg |
218 |
Q |
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| T |
32815021 |
gtactttagattgaaggtgtgttcaatgtccaatacatcggtgtttgacatgatcttaaatcatttgttaggtgtctttgatagtgtttcatagttattg |
32814922 |
T |
|
| Q |
219 |
agctataggatgtttcaatgtatttgtgtgtcctgctttatgtagataatgctttggtttctggatgtaaaatttgtgtttgtttgttctgaagcaaaac |
318 |
Q |
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| T |
32814921 |
agctataggatgtttcaatgtatttgtgtgtcctgctttatgtagataatgctttggtttctggatgtaaaatttgtgtttgtttgtt----agcaaaac |
32814826 |
T |
|
| Q |
319 |
taacaaatgggctgaataacttaggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatg |
418 |
Q |
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| T |
32814825 |
taacaaatgggctgaataacttaggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatg |
32814726 |
T |
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| Q |
419 |
aagatcccttggatgtcctagttctgatgcaggtaataatgcttaaagaactcattttaaagctattttatggaaatagctgtttattgtgaaatttgca |
518 |
Q |
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| T |
32814725 |
aagatcccttggatgtcctagttctgatgcaggtaataatgcttaaagaactcattttaaagctattttatggaaatagctgtttattgtgaaatttgca |
32814626 |
T |
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| Q |
519 |
actgtatttaaattgaaacttgtgttttgaataggagcctgtgatacctggttgtttccttcgtgcccgtgctattggattgatgcctatg |
609 |
Q |
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| T |
32814625 |
actgtatttaaattgaaacttgtgttttgaataggagcctgtgatacctggttgtttccttcgtgcccgtgctattggattgatgcctatg |
32814535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 455
Target Start/End: Complemental strand, 8800261 - 8800147
Alignment:
| Q |
341 |
aggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagt |
440 |
Q |
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| T |
8800261 |
aggttgatcggattctgtattcgtcagttgtttatcctcataactatggttttatccctcgaactctatgtgaagacaatgatccactcgatgtcttggt |
8800162 |
T |
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| Q |
441 |
tctgatgcaggtaat |
455 |
Q |
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| T |
8800161 |
tctcatgcaggtaat |
8800147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 309 - 453
Target Start/End: Original strand, 7986393 - 7986537
Alignment:
| Q |
309 |
gaagcaaaactaacaaatgggctgaataacttaggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctt |
408 |
Q |
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|||||| ||||||| ||||||| |||| ||||||||||||| |||||||||||||| |||||||| ||||| ||||| |||||||| ||| ||||| || |
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| T |
7986393 |
gaagcataactaactcatgggctaaataccttaggttgatcgtattctttactcatcggttgtctacccacacaactacggttttatcccacgaaccatt |
7986492 |
T |
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| Q |
409 |
tgtgaagatgaagatcccttggatgtcctagttctgatgcaggta |
453 |
Q |
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| T |
7986493 |
tgtgaagacagtgatcctatggatgttctggttctgatgcaggta |
7986537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 454
Target Start/End: Original strand, 49126665 - 49126778
Alignment:
| Q |
341 |
aggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagt |
440 |
Q |
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|||||||||| ||| | || || |||||||| ||||| ||||||||||||||||| || | || || |||||||| | ||||| | |||||||| || |
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| T |
49126665 |
aggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcctggt |
49126764 |
T |
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| Q |
441 |
tctgatgcaggtaa |
454 |
Q |
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||| |||||||||| |
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| T |
49126765 |
tctcatgcaggtaa |
49126778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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