View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_11 (Length: 429)
Name: NF10039_low_11
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 41238002 - 41238394
Alignment:
| Q |
16 |
ggaaaggttggatgcaatgtaaatacatactcctttatcgtcgggattcgccaaaggtggcttggtgagca---gtggttgagagtgaggagagtgggat |
112 |
Q |
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| T |
41238002 |
ggaaaggttggatgcaatgtaaatacatactcctttatcgtcgggattcgccaaaggtggcttggtgagcaactgtggttgagagtgagaagagtgggaa |
41238101 |
T |
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| Q |
113 |
acataagtgaaacttggttggtgcaaaaatggcagagccacgccatatcgggttgtgaagatggcagagtaagaagagtagtatagtacgggcattcgaa |
212 |
Q |
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| T |
41238102 |
acataagtgaaacttggttggtgcaaaaatggcagagccacgccatatcgggttgtgaagatggcagagtaagaagagtagtgtagtacgggcattcgaa |
41238201 |
T |
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| Q |
213 |
ttcgcataattggaagtggcatagtgagattatttatgagctgcactgcaaggaaaaaatggtgaagaaatttgcaataaaataacgaaatgctaacct- |
311 |
Q |
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| T |
41238202 |
ttcgcataattggaagtggcatagtgagattatttatgagctgcactgcaaggagaaaatggtgaagaaatttgcaataaaataacgaaatgctaaccta |
41238301 |
T |
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| Q |
312 |
---aataaataaattcacacagaatagaataacatgaacatgggaatatgcatttcaaacgaagaatagatgtaaaaagagtgcgtggtgcacgtaccga |
408 |
Q |
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| T |
41238302 |
ataaataaataaattcacacagaatagaat------aacatgggaatatgcatttcaaacgaagaa---atgtaaaaagagtgcgtggtgcaagtaccga |
41238392 |
T |
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