View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10039_low_12 (Length: 421)
Name: NF10039_low_12
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 122 - 403
Target Start/End: Original strand, 32523328 - 32523609
Alignment:
| Q |
122 |
tgaataaatggtagacaaaataatctgaatgacttatatgagagagcgaacaaccttcaaatctagtttggacaatgtcaagcggatacttgatggctaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32523328 |
tgaataaatggtagacaaaataatctgaatgacttatatgagagagcgaacaaccttcaaatctagtttggacaatgtcaagcggatacttgatggctaa |
32523427 |
T |
|
| Q |
222 |
tgtagtgagtccggcggcacctacagcgacggtgctctcccatcgcaatcgattgcgcttgggcggtacggttaacatgtgggaagatttgagaagagaa |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32523428 |
tgtagtgagtccggcggcacctacagcgacggtgctctcccatcgcaatcgattgcgcttgggcggtacggttaacatgtgagaagatttgagaagagaa |
32523527 |
T |
|
| Q |
322 |
aaatggagaatgagagatggtgaagctggaagcatgcatggtttttatactttgtttcacaacaactaacaagtagtaattg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32523528 |
aaatggagaatgagagatggtgaagctggaagcaagcatggtttttatactttgtttcacaacaactaacaagtagtaattg |
32523609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 32523207 - 32523303
Alignment:
| Q |
14 |
aagaacacaaacctcggtgcgagcaatggtgaaaatggcgtgaacagtaccgttgtatttaggaaactgagagaagagtcgacggtcattaactaca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32523207 |
aagaacacaaacctcggtgcgagcaatggtgaaaatggcgtgaacagtaccgttgtatttaggaaactgagagaagagtcgacggtcattaactaca |
32523303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University