View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_13 (Length: 408)
Name: NF10039_low_13
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 6945480 - 6945866
Alignment:
| Q |
19 |
tattacttgtcaagttaagcccaaattgaaatgaggtccaatagccggagataagtgctcataattcataagcacggttgacactaataaattaggcaac |
118 |
Q |
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| T |
6945480 |
tattacttgtcaagttaagcccaaattgaaatgaggtccaatagccggagataagtgctcataattcataagcacggttgacactaacaaattaggcaac |
6945579 |
T |
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| Q |
119 |
tcactttatagagtaaagtgagagtattatggattattgattaacaaattaaatctgaacattgtaagtatatcataataaatttcgagtttgttgaaat |
218 |
Q |
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| T |
6945580 |
tcactttatagagtaaagtgagagtattatggaatattgattaacaaattaaatctgaacattgtaagtatatcataataaatttcgagtttgttgaaat |
6945679 |
T |
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| Q |
219 |
aataacatccga--nnnnnnnncactttgcactttattcatttgaaatgaaccagatttgcatgaatcaaagagcacaggttacaacattaatcaatggt |
316 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945680 |
aataacatccgattttttttttcactttgcactttattcatttgaaatgaaccagatttgcatgaatcaaagagcacaggttacaacattaatcaatggt |
6945779 |
T |
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| Q |
317 |
gtgtgaatccgacggtgtgtatgggcgatatagtgacctgaagtttcagaccagattgatgcattggtgttttgtctctctgcttct |
403 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
6945780 |
gtgtgaatccgagggtgtgtatgggcgatatagtgacctgaagtttcagaccagattgatgcattggtgttttgtctcactgtttct |
6945866 |
T |
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