View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_14 (Length: 404)
Name: NF10039_low_14
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 39948460 - 39948839
Alignment:
| Q |
17 |
aagaaaattgtcctaggcaaagatcacattggtcttagcttgcagagtttgtgatcaatgagtataggaaaagatcaattggtgtgttgtaatgaactca |
116 |
Q |
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| T |
39948460 |
aagaaaattgtcctaggcaaagatcacattggtcttagcttgcagagtttgtgatcaatgagtataggaaaagatcaattggtgtgttgtaatgaactca |
39948559 |
T |
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| Q |
117 |
actgtttgaaaattttcaacctagtatgcgacttgtatttctgttagtaaaattcgcgctaaacaaatagagattgacgacgaagactaaaaggagtcct |
216 |
Q |
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| T |
39948560 |
actgtttgaaaattttcaacctagtatgcgacttgtatttctgttagtaaaattcgcgctaaacaaatagagattgacgacgaagactaaaaggagtc-- |
39948657 |
T |
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| Q |
217 |
tctacgaaaaatcgaatatcaataaagaaaacaaaaattttgcagggagtcggagactaaaagcagaatcatctatgtttatcgggacgaaaatcatatt |
316 |
Q |
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| T |
39948658 |
-ctacgaaaaatcaaatatcaataaagaaaacaaaatttttgcagggagtcggagactaaaagcagaatcatctatgtttatcgggacgaaaatcatatt |
39948756 |
T |
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| Q |
317 |
tgagtgtactagaaataacaattttagtacacaaatttgattttctattcatgacaaaattaaattggtacatctctgcttct |
399 |
Q |
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| T |
39948757 |
tgagtgtactagaaataacaattttagtacacaaatttgattttctattcatgacaaaattaaattggtacatttctgcttct |
39948839 |
T |
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