View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_17 (Length: 388)
Name: NF10039_low_17
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 136 - 296
Target Start/End: Original strand, 46305876 - 46306028
Alignment:
| Q |
136 |
aataatttgaaattataggaaaattgaggaatttatctagaagtgtgtgtgtatcaaggaagcttctacaagtgtgtctagagttatcatctattagcac |
235 |
Q |
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| T |
46305876 |
aataattaaaaattatag-aaaattgaggaatttatctagaagtgtgt----atcaaggaagcttctacaagtgtgtctagagttatc---tattagcac |
46305967 |
T |
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| Q |
236 |
ctgaaaattactccttgtacttgagatttgaaatcaagaaaattgtacgttttctataaat |
296 |
Q |
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| T |
46305968 |
ctgaaaattactccttgtacttgagatttgaaatcaagaaaattgtacgttttctagaaat |
46306028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 293 - 378
Target Start/End: Original strand, 46306063 - 46306144
Alignment:
| Q |
293 |
aaattgtattaaggaagctcctacaagtgtgatatatagattaatcgattcctattttattttgtttttactcccatccatctctg |
378 |
Q |
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| T |
46306063 |
aaattgtattaaggaagctcctacaagtgtgata----gattaatcgattcctattttattttgtttttactcccatccatctctg |
46306144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 296
Target Start/End: Complemental strand, 46025482 - 46025371
Alignment:
| Q |
182 |
gtgtgtatcaaggaagcttctacaagtgtgtctagagttatcatctattagcacctgaaaattactccttgtacttgagatttgaaatcaagaaaattgt |
281 |
Q |
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| T |
46025482 |
gtgtgtattaaggaagctcctacaagtgtgtatagagttatc---tattagcacttgtaaattcctccttgtactcgacatttgaaatcaataaaattgt |
46025386 |
T |
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| Q |
282 |
acgttttctataaat |
296 |
Q |
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| T |
46025385 |
aagttttctagaaat |
46025371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 296
Target Start/End: Original strand, 46262176 - 46262287
Alignment:
| Q |
182 |
gtgtgtatcaaggaagcttctacaagtgtgtctagagttatcatctattagcacctgaaaattactccttgtacttgagatttgaaatcaagaaaattgt |
281 |
Q |
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| T |
46262176 |
gtgtgtattaaggaagctcctgcaagtgtgtatagagttatc---tattagcacttgtaaattcctccttgtagtcgacatttgaaatcaataaaattgt |
46262272 |
T |
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| Q |
282 |
acgttttctataaat |
296 |
Q |
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| T |
46262273 |
aagttttctagaaat |
46262287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 46305825 - 46305861
Alignment:
| Q |
113 |
aaggaatgttggaagcctcttataataatttgaaatt |
149 |
Q |
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| T |
46305825 |
aaggagtgttggaagcctcttataataatttgaaatt |
46305861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 46306197 - 46306247
Alignment:
| Q |
246 |
ctccttgtacttgagatttgaaatcaagaaaattgtacgttttctataaat |
296 |
Q |
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| T |
46306197 |
ctccttgtactcgacatttgaaatcaataaaattgtaagttttctagaaat |
46306247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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