View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_18 (Length: 381)
Name: NF10039_low_18
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 25802860 - 25802510
Alignment:
| Q |
20 |
tggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802860 |
tggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatga |
25802761 |
T |
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| Q |
120 |
gatggagttgtatgctgatattgtagtgatagctggaggtcatctatgaatcaaaaaatttatattgaatgaataaatttgcaattttcatctcacttgt |
219 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25802760 |
gatggagttgtatactgatattgtagtgatagctggaggtcatctatgaatcaaaaaatttatattgaatgaataaaattgcaattttcatctcacttgt |
25802661 |
T |
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| Q |
220 |
attatttatttggtttcaaatttttggtattgattgaatcatgttttattccctcgatttagagcgtgtagaatgaaatggaacattgtagattaaaatc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802660 |
attatttatttggtttcaaatttttggtattgattgaatcatgttttattccctcgatttagagcgtgtagaatgaaatggaacattgtagattaaaatc |
25802561 |
T |
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| Q |
320 |
ttacttttttgtccctgtctattcctctccaatatgttctttatcaccttt |
370 |
Q |
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| T |
25802560 |
ttacttttttgtccctgtctattcctctccaatatgttctttatcaccttt |
25802510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 23922432 - 23922233
Alignment:
| Q |
26 |
tcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatgga |
125 |
Q |
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| T |
23922432 |
tcaaatatgctagtgatgcacttggtaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgca |
23922333 |
T |
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| Q |
126 |
gttgtatgctgatattgtagtgatagctggaggtcatctatgaatcaaaaaatttatattgaatgaataaatttgcaattttcatctcacttgtattatt |
225 |
Q |
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||| ||| |||||||||| ||||||| ||||| ||||||| ||| || ||||||||||| ||||||||| |||||||| ||||||||||||||| |
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| T |
23922332 |
gttatataatgatattgtattgatagccggaggccatctataaataaataaatttatatttcatgaataaaaccacaattttctcctcacttgtattatt |
23922233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 196
Target Start/End: Complemental strand, 23914758 - 23914625
Alignment:
| Q |
63 |
tagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcat |
162 |
Q |
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|||||||||| |||||||| |||||||| ||| ||||||||||| |||||||||||||| |||| ||| |||||||||| ||||||| | ||| ||| |
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| T |
23914758 |
tagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagccgcaggccat |
23914659 |
T |
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| Q |
163 |
ctatgaatcaaaaaatttatattgaatgaataaa |
196 |
Q |
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|||| ||| || |||||||||| ||||||||| |
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| T |
23914658 |
ctataaataaattaatttatatttcatgaataaa |
23914625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 24435898 - 24435842
Alignment:
| Q |
54 |
gtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacact |
110 |
Q |
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|||||||| |||||||| |||||||||||||||||||| ||||||| || ||||||| |
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| T |
24435898 |
gtgcgaacatagcttagttaatgaaaagattgttaatacttcttccctttctacact |
24435842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 35079483 - 35079337
Alignment:
| Q |
20 |
tggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatga |
119 |
Q |
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||||||||||||||||| | |||||| | |||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||| || |||||||||| |
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| T |
35079483 |
tggctgtcaaatatgctagcgatgcacttgacatgtgtgaacgtagcttggctaacgaaaagattgttaatacttcttccattgctgcattgaatcatga |
35079384 |
T |
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| Q |
120 |
gatggagttgtatgctgatattgtagtgatagctggaggtcatctat |
166 |
Q |
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|||| ||||||| | ||||||||||| ||||| ||||| ||||||| |
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| T |
35079383 |
gatgatgttgtatacagatattgtagtcatagccggaggccatctat |
35079337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 35074516 - 35074353
Alignment:
| Q |
18 |
catggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcat |
117 |
Q |
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|||||||||||| |||||| | |||||| | |||||||| ||||||||||| ||| ||||||||||||| |||| ||||||||||| | ||||||||||| |
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| T |
35074516 |
catggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatacttcttccattgttgcactgaatcat |
35074417 |
T |
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| Q |
118 |
gagatggagttgtatgctgatattgtagtgatagctggaggtcatctatgaatcaaaaaattta |
181 |
Q |
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|| ||| |||| || | |||||||||||||||| ||||| ||||||| ||| || ||||||| |
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| T |
35074416 |
gacatgaagttatacacaaatattgtagtgatagccggaggccatctataaattaataaattta |
35074353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 13436196 - 13436259
Alignment:
| Q |
62 |
gtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatgga |
125 |
Q |
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| T |
13436196 |
gtagcttagttaatgaaaagatttttaatatttcttccatttctacaatgaatagtgagatgga |
13436259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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